| New model in OGS2.0 | DPOGS214457 |
|---|---|
| Genomic Position | scaffold1775:+ 33779-37828 |
| See gene structure | |
| CDS Length | 2178 |
| Paired RNAseq reads | 2759 |
| Single RNAseq reads | 7018 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009578 (0.0) |
| Best Drosophila hit | CG11107 (0.0) |
| Best Human hit | putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to CG11107-PA isoform 1 [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to ATP-dependent RNA helicase [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0008026 ATP-dependent helicase activity GO:0003724 RNA helicase activity GO:0004004 ATP-dependent RNA helicase activity GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0005524 ATP binding GO:0003676 nucleic acid binding GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR007502 Helicase-associated domain IPR011709 Domain of unknown function DUF1605 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10048 |
Nucleotide sequence:
ATGTGTAATTTGTTTAGAGAGGAGAAAGCGGCGGCAGCAGCTAAGGCTGGCGGCAGTGAG
GCCTCGGAGTCGACGACAGCAGCCACGACGCCCGGCACACCCTCCAGCACACCCGCCAGC
ACGCCGGGGTTGAACCCATACACAGGTCTTCCCCACTCCCCTCGCTACCACGAGCTGCTG
AGGCGACGTCTCGGCCTGCCGGTGTGGGAGTACAAGAACGACTTCATGAGACTGTTGAAT
ACACACCAGTGCGTGGTGCTGGTCGGAGAGACCGGCTCGGGGAAGACCACGCAGATACCG
CAGTGGTGCGTCGAGTTTGCTGCCGTGACCGGCGGACAGGCACACGGGGTGGCCTGCACC
CAGCCCCGCAGGGTGGCCGCCATGTCCGTGGCACAGAGAGTGGCCGAGGAGATGGACGTG
GCGCTGGGGCAACAGGTCGGCTACAGCATACGGTTCGAGGACTGTTCGGGACCGCAGACC
GTACTGAAGTATATGACGGACGGTATGTTGCTGAGAGAGGGAATGTCCGACCCCATGCTG
GAGCAGTACAGGGTCATACTGCTGGACGAGGCGCACGAGAGGACCCTCGCCACCGACATA
CTGATGGGGGTGCTCAAAGAGGTCATCAAGCAGAGGTCCGACCTCAAGCTCGTTATCATG
TCGGCCACGCTGGACGCGGGCAAGTTTCAACTGTACTTCGACAACGCACCCTTGATGAAC
GTACCGGGGCGGACACATCCCGTCGAGATCTTCTACACGCCGCAGCCCGAGAGGGACTAC
CTGGAGGCGGCCATACGGACCGTCATACAGATACACATCTGCGAGGAGGTGGCCGGGGAC
ATACTCTTGTTCCTGACCGGTCAGGAGGAGATCGAGGACGCCTGCAAGAGGATAAAGAGA
GAGATAGACAACCTAGGACCGGACGTCGGCGAACTCAAGTGTATACCGCTGTACTCGACG
CTGCCGCCCAATCTGCAGCAGAGGATATTCGAGCCGGCGCCCCCCAACAGGCCGAACGGC
AGGATCGGCAGGAAAGTGGTGGTCTCCACGAACATAGCGGAGACCTCGCTCACCATAGAC
GGCGTTGTGTTCGTCATAGACACGGGCTTCTCCAAACAGAAGGTTTACAACCCGCGGGTG
AGGGTGGAGTCTCTGCTGGTGTCTCCCATCAGTAAGGCCTCGGCCCAGCAGCGAGCGGGC
CGAGCGGGCCGGACCAGGCCGGGGAAGTGCTTCAGGCTGTACACGGAGAAGGCCTACAAG
GACGAAATGCAAGATAACACATACCCCGAGATCCTGAGATCAAACTTAGGATCTGTAGTT
TTGCAGTTGAAAAAGCTGGGCATCGATGACTTGGTGCACTTTGACTTCATGGACCCGCCG
GCGCCGGAGACGCTCATGCGCGCGCTGGAGTTGCTCAACTACCTGGCCGCGCTCGACGAC
GACGGCAACCTGACCGACCTGGGCGCTGTGATGGCGGAGTTCCCTCTCGACCCTCAGCTG
GCTAAGATGTTGATCGCCAGCTGTAACCACAACTGTTCCAACGAGATACTCTCCATCACC
GCCATGCTGTCAGTCCCGCAATGCTTCGTGCGTCCCAACGAAGTAAGGAAGGCTGCGGAC
GAGGCCAAGATGAGGTTCGCTCACATCGACGGTGACCACCTCACGCTGCTGAACGTGTAC
CACGCCTTCAAGCAGAATATGGATGACCCCCACTGGTGTTACGACAACTTCATCAACTAC
AGGTCACTCAAGTCTGGTGATAATGTCCGGCAACAACTCAGCAGGATCATGGACAGGTTC
AACTTGAAGAGGACCAGCACCGAGTTCACAAGCAAAGACTACTACATTAATATAAGGAAA
GCTCTCGTCAATGGCTTCTTTATGCAAGTGGCGCACCTAGAGCGGACCGGTCACTACCTG
ACGGTGAAAGACAACCAGCAGGTCCAACTGCACCCCTCCACGTGTCTAGACCACAAGCCC
GACTGGGTCATATACAACGAGTTCGTGCTCACCACCAAGAACTACATACGAACAGTCACC
GACATCAAACCGGAGTGGTTGCTCCGGATCGCCCCGCAGTACTATGAGTTGTCCAACTTC
CCGCCGTGCGAGGCGCGGAGGCAGCTGGAACTGCTGCAAGCGAGGCTCGATTCCAAACTG
TACCAGGAGGGGTTCTAG
Protein sequence:
MCNLFREEKAAAAAKAGGSEASESTTAATTPGTPSSTPASTPGLNPYTGLPHSPRYHELL
RRRLGLPVWEYKNDFMRLLNTHQCVVLVGETGSGKTTQIPQWCVEFAAVTGGQAHGVACT
QPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREGMSDPML
EQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQLYFDNAPLMN
VPGRTHPVEIFYTPQPERDYLEAAIRTVIQIHICEEVAGDILLFLTGQEEIEDACKRIKR
EIDNLGPDVGELKCIPLYSTLPPNLQQRIFEPAPPNRPNGRIGRKVVVSTNIAETSLTID
GVVFVIDTGFSKQKVYNPRVRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYK
DEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDD
DGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEVRKAAD
EAKMRFAHIDGDHLTLLNVYHAFKQNMDDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRF
NLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTVKDNQQVQLHPSTCLDHKP
DWVIYNEFVLTTKNYIRTVTDIKPEWLLRIAPQYYELSNFPPCEARRQLELLQARLDSKL
YQEGF