| New model in OGS2.0 | DPOGS206294 |
|---|---|
| Genomic Position | scaffold1947:- 10365-20868 |
| See gene structure | |
| CDS Length | 3393 |
| Paired RNAseq reads | 1897 |
| Single RNAseq reads | 4669 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010804 (0.0) |
| Best Drosophila hit | RNA polymerase I 135kD subunit (0.0) |
| Best Human hit | DNA-directed RNA polymerase I subunit RPA2 isoform 1 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to CG4033-PA, partial [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG4033-PA, partial [Nasonia vitripennis] (0.0) |
| GeneOntology terms | GO:0006360 transcription from RNA polymerase I promoter GO:0003899 DNA-directed RNA polymerase activity GO:0005736 DNA-directed RNA polymerase I complex GO:0005634 nucleus GO:0003677 DNA binding GO:0032549 ribonucleoside binding |
| InterPro families | IPR015712 DNA-directed RNA polymerase, subunit 2 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR007644 RNA polymerase, beta subunit, protrusion IPR007645 RNA polymerase Rpb2, domain 3 IPR007641 RNA polymerase Rpb2, domain 7 IPR009674 RNA polymerase I, Rpa2 specific IPR007642 RNA polymerase Rpb2, domain 2 IPR007121 RNA polymerase, beta subunit, conserved site |
| Orthology group | MCL14987 |
Nucleotide sequence:
ATGGATCCCAAAAAGATCCTACACGAACCGTCTTTGAAGTATACTAGTAATCCTGATTAT
AGAAGACCACCAAAAACCGCTAACCCGTACTTACAATGTCTGGGAACTCCGCATATAGAT
TCATTCAATTACATGATCAAAGATGGATTAAAAGCTGCCATAGATGATTTAATTCCCGTC
GAATTTGATGTGCCAAGCGGAGAAAGAATTAAAATAACTATAGATGAAGCTGCTTTCGCG
AAACCAAGTGTTCCTATGGAGGCTGTAGGAGTTAAAAATCAAATAGTCTTGCCGACAGAA
TGCAGACAAAGAGCAGCTACATATAAAGGAGATTTCAAAGTTAGATTATCTTTTACCGTT
GATGGGAAGACCATATCAATGGACAGATCCCTCGGCAGTTTGCCAATCATGTTAAAGTCC
AAAGTTTGCCACTTGGCTGACCTGTCTCCTGAGGAACTGGTGAAGAAGAATGAACATGCG
GACGAGTGGGGCGGATACTTTATTATTAAGGGTCATGAACGTCTGGCTCGCATGTTGTTA
GTCACCAGACGGAATTACCCCGTCGCTATCAAGAGATCCGGTTGGAGGATGAGAGGGAAT
CTGTTCACGGATTACGGTGTGCTCATGAGATGTGTGAAACCAGATCAAACTAGTACTAAC
AACGTACTGCATTTTCTCCAAAATGGAACTTGCAAATTAATGTTCTCTCATCGTAAAGTG
ATGTACTACGCTCCGCTGGTGCTGATACTAAAGTGTCTCGTGGACTGGCCCGACCATTAC
ATATACAGATTACTCCTACACGGAAAGAAGAATGACTTGTATTATGTTAACTGTGTGCAG
AACATGCTCCGGGAACTTCACGAGCAGGATCTCCATACTTCTGTTGAATGTCGTTCCTAC
ATGGGTCGTATGTTCAGAGCACGGCTGGATCTTCCGCCGGATGCTACAGATCTGGATGCT
GCGAACTTCCTGTTAGTGAGGTGCATCATGATACACCTGAACGATTACAAGGATAAGTTC
TACGGATTGGTGTTCATGAATCAGAAGCTGTTCGATCTGGTGCAGAATAAATGCAAGGTG
GAGGGAGCTGATGCTGTGATGGTGCAGGAGTTGCAGGTGGGAGGTCACCTGTACTTGCAG
GTGTTGAAGGAACGCCTCCAGACCTTGCTTTACGTCCTCAAAGCCAATATCATCAAGAAG
TCTAAAACCAGCAGATTGTCGCTGACTTCGAAAGAACTGCAGCAAATAATACGTTCAGCC
GGCGGCCTGGAACAGAAGATGGAGACGTTCCTAGCGACTGGTAACGCTCCGTCCAACAAC
GTCAACCTGGCGCAGTACAAAGGACTGACCATAGTCGCTGAAAACCTCAACAGAATGAGA
TACATGTCGCATTTCAAGGCGATACATCGCGGTTCGTTCTTCATGGAGATGCGTACGACG
GAGGCACGTCAACTGTTGCCAGATGCTTGGGGCTTCGTGTGTCCCGTACATACGCCCGAT
GGAGCACCCTGTGGCTTACTCAACCATCTCACCGCCTCCGCACAGGTCACCCAACAACCC
GATCCCAAGCAAGTGTCATCTCTACCGGCCGTTCTCGAGAAATGCGGGATGGACCCTATA
AGCTCTGTGGCCCACACTCCGTTGACCCACGATGTCTACAAATATCCGGTATTCATAGAT
GGTAGGCTGGTGGGCTATTTCAATGAGGACACTGCCCTGAAATCGGTGTCATACCTCCGA
ACGTTGAAGGTCAAAGGTGAAGACGTGCCTATATCCACTGAGATTGTTATGGTGCCTAAA
AAACAGATACCGGCCCAATATGCCGGCGTGTTTCTATTCACGAGCGAAGCGCGCATGATG
CGGCCGGTCATTAATCTGTCGACGGGTCAACTTGAACTGGTCGGCACTATGGAACAACTC
TACTTGGACATAGCCGTAGCACAGACAGAGATCATCAAAGGCAAAACCACCCACTTGGAG
TTATCGAAATCAGCGTTTATGAGTAATTTGGCCCAACTAGTTCCCATGCCGGACTGCAAC
CAATCACCGCGTAACATGTACCAGTGTCAGATGGGTAAACAAACGATGGGAACCCCTATC
CATACTTGGTCTACGAACGCTGAGACCAAGTTATACCGGTTGCAGACGGGTGCTACGCCG
CTCTTCCGGCCGGTACACCACGACAACCTCAGTCTAGACGACTATCCTTCCGGCACAAAC
GCAATACTCGCCGTTATATCCTACACAGGCTACGATATGGAAGACGCCATGATAATAAAC
AAATCGTCGTACGAGCGAGGTTTCGCAGCGGGTTCCGTATACAAATCCAACTTCGCGGAA
CTGAAGAGCTCGTCTTCATACTTCTGCCGCGACCCCACGAGAACTGACCTCGCGGCTTAC
ATGGACGAGGACGGACTCCCGGCCGTGGGGGCGAGGATACAACCCGAGGATCCCTTCTAC
TGCCACTACGACAGCGACAGTTCAAAGTTCGTGGTAACGAAATACCACGGCAAGGAGGAG
GTTGTGGTGGACAGTGTGAGGCTCTGCGGGGAGTTCAGCAGCAAGGCTCCCAAAAAAGCT
TGCATCATGGTCAGAGTGCAGCGCAATCCGACGGTTGGTGACAAATTCGCTTCACGAGCT
GGTCAAAAGGGAATCTGTTCCCAGAAATGGCCGGCCGAGGACTTACCCTTCACTGAATCG
GGCCTCATACCGGACGTGCTGTTCAATCCGCACGGCTTCCCCTCGCGGATGACCATCGCC
ATGATGATAGAGTGTATGGCGGGGAAAGCCGCCTGTGCCTGCACGGACACGTCGGTCCAC
GACGCTACGCCGTTCCGCTTCAACGAACAGGACACGGCCATCAATTACTTCGGGCGCCTG
CTGGAGGCCGGCGGCTACAACTACTACGGCACGGAGAGGATCTACAGCGGCGTCGACGGC
CGCGAGATGCAGGCCGACATATTCTGCGGACTAGTGCACTACCAGCGGCTGCGGCACATG
GTGTCCGACAAGTGGCAGGTCCGCACGACCGGGGCCGTGGACGCTCTCACCCGTCAGCCC
GTGAAGGGGCGGCGGCGCGGAGGAGGAGTAAGGCTCGGAGAAATGGAAAGGGACGCGCTC
TTAGCACACGGAGCCACTTTTCTACTACAAGACAGACTCTTCCACTGTTCAGACAAGAGC
GAGGCTATTATTTGCTCCAAATGCGGCACACTCCTCGGTCCGATATCTGGTAACACCGAG
GGTAGCAAGGACACGTGCCGCTTGTGCGGCGAGGGGAACTTGTTGCTCATATCGATACCC
TATATATTCAAGTTCTTTGTGACCCAGTTGGCCTCCGTCAATATTAATATTAAAATCAAC
TGTAACAGCAACTTGGCGATAGGAAGCTGCTGA
Protein sequence:
MDPKKILHEPSLKYTSNPDYRRPPKTANPYLQCLGTPHIDSFNYMIKDGLKAAIDDLIPV
EFDVPSGERIKITIDEAAFAKPSVPMEAVGVKNQIVLPTECRQRAATYKGDFKVRLSFTV
DGKTISMDRSLGSLPIMLKSKVCHLADLSPEELVKKNEHADEWGGYFIIKGHERLARMLL
VTRRNYPVAIKRSGWRMRGNLFTDYGVLMRCVKPDQTSTNNVLHFLQNGTCKLMFSHRKV
MYYAPLVLILKCLVDWPDHYIYRLLLHGKKNDLYYVNCVQNMLRELHEQDLHTSVECRSY
MGRMFRARLDLPPDATDLDAANFLLVRCIMIHLNDYKDKFYGLVFMNQKLFDLVQNKCKV
EGADAVMVQELQVGGHLYLQVLKERLQTLLYVLKANIIKKSKTSRLSLTSKELQQIIRSA
GGLEQKMETFLATGNAPSNNVNLAQYKGLTIVAENLNRMRYMSHFKAIHRGSFFMEMRTT
EARQLLPDAWGFVCPVHTPDGAPCGLLNHLTASAQVTQQPDPKQVSSLPAVLEKCGMDPI
SSVAHTPLTHDVYKYPVFIDGRLVGYFNEDTALKSVSYLRTLKVKGEDVPISTEIVMVPK
KQIPAQYAGVFLFTSEARMMRPVINLSTGQLELVGTMEQLYLDIAVAQTEIIKGKTTHLE
LSKSAFMSNLAQLVPMPDCNQSPRNMYQCQMGKQTMGTPIHTWSTNAETKLYRLQTGATP
LFRPVHHDNLSLDDYPSGTNAILAVISYTGYDMEDAMIINKSSYERGFAAGSVYKSNFAE
LKSSSSYFCRDPTRTDLAAYMDEDGLPAVGARIQPEDPFYCHYDSDSSKFVVTKYHGKEE
VVVDSVRLCGEFSSKAPKKACIMVRVQRNPTVGDKFASRAGQKGICSQKWPAEDLPFTES
GLIPDVLFNPHGFPSRMTIAMMIECMAGKAACACTDTSVHDATPFRFNEQDTAINYFGRL
LEAGGYNYYGTERIYSGVDGREMQADIFCGLVHYQRLRHMVSDKWQVRTTGAVDALTRQP
VKGRRRGGGVRLGEMERDALLAHGATFLLQDRLFHCSDKSEAIICSKCGTLLGPISGNTE
GSKDTCRLCGEGNLLLISIPYIFKFFVTQLASVNINIKINCNSNLAIGSC