New model in OGS2.0 | DPOGS206260  |
---|---|
Genomic Position | scaffold1947:+ 5292-8455 |
See gene structure | |
CDS Length | 1374 |
Paired RNAseq reads   | 2164 |
Single RNAseq reads   | 6812 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010739 (1e-177) |
Best Drosophila hit   | Nop56 (7e-174) |
Best Human hit | nucleolar protein 56 (1e-148) |
Best NR hit (blastp)   | PREDICTED: similar to nucleolar KKE/D repeat protein; DmNOP56 [Nasonia vitripennis] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to nucleolar KKE/D repeat protein; DmNOP56 [Nasonia vitripennis] (1e-174) |
GeneOntology terms    | GO:0030532 small nuclear ribonucleoprotein complex GO:0005730 nucleolus |
InterPro families    | IPR012976 NOSIC IPR002687 Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain IPR012974 NOP5, N-terminal |
Orthology group | MCL13666 |
Nucleotide sequence:
ATGAGCAAGTTATACGTGCTCTATGAGCACAGCGCAGGCTTTGCGCTCTTCCGAGTAACA
GAGTTTGAAGAGCTGGCAGCCTTTCTGCCGCAAGTGGAGGAATCCGTTACAGACTTGCAA
AAATTCAATTCCGTTGTTACTTTGGTAGCTTTCCAGCCCTTCAAATCAGCAGTGCTGGCT
TTGGAGAATATTAATGCCGTTTCTGAAGGTACTTCATATTTTTACGTCGCTTATGCTAAC
TTTATGCCGTATTGGTATTGGTTAGGTAGAGAGAGGAGCTTGGACGGTGGAGACCCCAAG
CTTGGGGCTGCAATTAGTGAGGCTCTGGAGATACCTTGCTCTCATACCGGCGCTGTTCCA
GAAGTTATCCGAGGTATAAGACATCACTTCCATTCGCTCATCAAAGGTCTTACAGCGAAG
GCGTGTAGTGTGGCCCAGCTGGGTCTCGGTCACTCTTATTCGAGAGCTCGAGTAAAGTTC
AATGTTCACCGAGTTGATAACATGATCATACAATCTATAGCCCTGCTCGATCAACTCGAC
AAGGATGTTAACACGTTTTCTATGAGGATCAGAGAATGGTATTCCTACCACTTCCCGGAG
CTTGTGAATATTGTGCCTGAAAATTATCTTTACTCGAAATGTGCGGAATTCATCAAAGAC
AGGAAGACATTGACGGATGAGTCTGTGGAACCGCTCACAGATATCCTCGGTGACTCTGAA
AAGGCCCAGGCTATAATTGATGCATCAAAAATGTCAATGGGGATGGATATATCACCCGTC
GACTTGATCAATATTCAGATGTTTGCTAGCAGAGTCGTTGCATTGAGTAATTACAGGAAG
CAAATCGCTGAATATCTTCATACAAAAATGGCGTCAGTGGCACCAAATCTGACGACACTA
GTTGGTGATCAGGTTGGGGCCCGGCTTATATCCAAAGCTGGTTCCCTTACCAGTTTGGCC
AAATATCCTGCTTCTACATTACAAATTTTAGGTGCCGAGAAAGCTTTGTTCCGAGCTTTG
AAAACACGTTCGGCGACACCGAAGTATGGTTTGCTGTATCATTCGAGTTTCATTGGTAGG
GCTGGAGTGAAGAACAAAGGTCGCATCAGTCGCTACCTAGCTAACAAGTGCTCTATTGCC
AGCAGGATCGACTGTTTCTCGGAAAACTTATCAAGCGTTTTTGGTGAGAAATTAAGACAG
CAGGTGGAAGACCGCTTGAAGTTCTATGAGACGGGTGACATTCCTATGAAGAATATTGAT
GTCATGAAACAGGCTATAGAGGAAATAACACAACAAGAGGATGCGTCAGCTAAGAAGAAG
AAGAAGAAAAAGAAGAAGGAACAGAATAACGAGGTGCCTATGGATGAAGATTGA
Protein sequence:
MSKLYVLYEHSAGFALFRVTEFEELAAFLPQVEESVTDLQKFNSVVTLVAFQPFKSAVLA
LENINAVSEGTSYFYVAYANFMPYWYWLGRERSLDGGDPKLGAAISEALEIPCSHTGAVP
EVIRGIRHHFHSLIKGLTAKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLD
KDVNTFSMRIREWYSYHFPELVNIVPENYLYSKCAEFIKDRKTLTDESVEPLTDILGDSE
KAQAIIDASKMSMGMDISPVDLINIQMFASRVVALSNYRKQIAEYLHTKMASVAPNLTTL
VGDQVGARLISKAGSLTSLAKYPASTLQILGAEKALFRALKTRSATPKYGLLYHSSFIGR
AGVKNKGRISRYLANKCSIASRIDCFSENLSSVFGEKLRQQVEDRLKFYETGDIPMKNID
VMKQAIEEITQQEDASAKKKKKKKKKEQNNEVPMDED