New model in OGS2.0 | DPOGS208794  |
---|---|
Genomic Position | scaffold1852:- 53319-54711 |
See gene structure | |
CDS Length | 471 |
Paired RNAseq reads   | 178 |
Single RNAseq reads   | 2248 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007656 (8e-53) |
Best Drosophila hit   | Rbp1-like (5e-36) |
Best Human hit | serine/arginine-rich splicing factor 7 isoform 1 (9e-29) |
Best NR hit (blastp)   | rbp1-like RNA-binding protein PB [Bombyx mori] (3e-69) |
Best NR hit (blastx)   | rbp1-like RNA-binding protein PB [Bombyx mori] (1e-68) |
GeneOntology terms    | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0006376 mRNA splice site selection GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0008380 RNA splicing GO:0071011 precatalytic spliceosome |
InterPro families    | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL17134 |
Nucleotide sequence:
ATGTCTCGGTACCGTGAATGGGATCTATCTTGCAAAGTGTACGTAGGAAATCTTGGCACA
AACGCATCTAAATACGAAATTGAGAAAGTCTTTTCAAAATATGGCAGTATTAGAAATGTG
TGGGTGGCGAGAAATCCGCCCGGTTTTGCGTTTGTTGAATATGAAGATCCAAGAGACGCC
GAAGATTCCGTACGCGGTTTAGATGGCACACGTTGTTGCGGCACAAGAATTCGTGTTGAG
ATGAGCAACGGGAGGACACGACGAGATCGCAGGTCCATTTTATCAACCAACCACCAACAC
ACCAACGACCTCACCACATCTCTACACCACAACTACGGCTTCTTTACCAATAAGACATCC
GCGAACGTCGCTCGCAACACCCCGCTCTGCGATCGGCTCTCCAAATTACTACGCGCAGCT
GAAGCCTTCGTCAACTGCGTCCCTCCCCTCCTCTTAACTGCCATCACCTAG
Protein sequence:
MSRYREWDLSCKVYVGNLGTNASKYEIEKVFSKYGSIRNVWVARNPPGFAFVEYEDPRDA
EDSVRGLDGTRCCGTRIRVEMSNGRTRRDRRSILSTNHQHTNDLTTSLHHNYGFFTNKTS
ANVARNTPLCDRLSKLLRAAEAFVNCVPPLLLTAIT