| New model in OGS2.0 | DPOGS200902 |
|---|---|
| Genomic Position | scaffold5:+ 42435-49128 |
| See gene structure | |
| CDS Length | 1296 |
| Paired RNAseq reads | 3 |
| Single RNAseq reads | 7 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000670 (5e-55) |
| Best Drosophila hit | tailless (3e-25) |
| Best Human hit | nuclear receptor subfamily 2 group E member 1 (2e-28) |
| Best NR hit (blastp) | PREDICTED: similar to PNR-like [Tribolium castaneum] (7e-40) |
| Best NR hit (blastx) | PREDICTED: similar to nuclear receptor [Nasonia vitripennis] (4e-43) |
| GeneOntology terms | GO:0003677 DNA binding GO:0004879 ligand-dependent nuclear receptor activity GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0003700 sequence-specific DNA binding transcription factor activity GO:0008270 zinc ion binding GO:0043565 sequence-specific DNA binding |
| InterPro families | IPR013088 Zinc finger, NHR/GATA-type IPR008946 Nuclear hormone receptor, ligand-binding IPR001628 Zinc finger, nuclear hormone receptor-type IPR001723 Steroid hormone receptor |
| Orthology group | MCL39456 |
Nucleotide sequence:
ATGGATTGCAAGCCGGAAGTCGTGTGTCGTGTCTGCGGAGACAAGGCTTCTGGAAAGCAC
TACGGCGTTCCGTCCTGTGATGGTTGCAGAGGTTTCTTTAAACGAAGTATCCGAAGGAAC
CTAGATTACATTTGCAAAGAAAACGGTTCGTGCATAGTGGACGTGAGCAGAAGGAATCAG
TGCCAGGCCTGCCGGTTCTCGAAGTGTTTACGAGTTAATATGAAGAAAGATGCTGTACAA
AATGAACGTGCACCGAGAACACTGGGCAATCAACATCAACTTGCTCTTCAAAAGCTGAGT
TACTTATCACGGCAGTCGGCTTTTATTCCTAATCATTCTCCGGTAGCCTTATCGACATTT
TCTCCATATACGTATCCAATACAAGACCGCGTCCAAAATCCTTACTTGGCTAATTCATCC
TTTCAAAATTATTCGAATCAATCGTCGATGCCAATGGACGTTCCTAGTCTCAACCCCCTT
TTTAACAATCCAAGTGGCATAAATCCGTTCAAATTTCCGCTATTCCCTGGACCTATGCAA
TACTCTTTACCACATCCGCACACATATTTTTCTGCAAATATTTTCTACCCTCCCATCATA
TCTGCTGAGAATCCTACACTGTACTTGGATTCACAAGAAACTTCTTCGAACGCATTGCAT
AACTCACAATTCGGTACATCTATACAAAGGAATATAGCAGAAAAACATGACTCACTAAAC
TGTGACAAAATAAAAGAAAATGAAGTTACCAGTTCTGAAGAAACCTGCAGGGACACAGCA
TCAAAAGGCGCAACTATAAACAAAAATCACAATCAGTCAAACCAGAAAGTTGACTGCACA
GAAAATATTATCCCTAAATGCAGTAATAAAAATAAGGAACAAGATTTGTTTACGTCAAGA
GAAAAACGTTTCTCGCTGTCCGACCTAGCTGATTATTCGGACGTCGTTGGACAGACCAAG
GCCAATGTAATGTTTATGGACCGAGGTGTTAAACATAGGATCGATTCACAAAATTCTCAA
ATGGACATAGAGTTATACAATCCAGGTGCAAGGCTGTTGGTGTCGGCCGTGCAATGGTTA
CATACAATTCCGTCATTCACACAAATCTCCCAAAAGGAACAAATATTGCTGCTACAAAGT
AATTGGAAGGAATTGTTTATAATGCATGCTGCAGAATACTCTTTTTGTTTCGACGAAGAT
CTCACCGGTTATCACGTCGAAGCGGCCAAATATCAAAGAAGAGATAAGGAAATTGGCAGC
GCTCTTGAAAAGAATTTCCCTGTGCCGATTAGATAA
Protein sequence:
MDCKPEVVCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYICKENGSCIVDVSRRNQ
CQACRFSKCLRVNMKKDAVQNERAPRTLGNQHQLALQKLSYLSRQSAFIPNHSPVALSTF
SPYTYPIQDRVQNPYLANSSFQNYSNQSSMPMDVPSLNPLFNNPSGINPFKFPLFPGPMQ
YSLPHPHTYFSANIFYPPIISAENPTLYLDSQETSSNALHNSQFGTSIQRNIAEKHDSLN
CDKIKENEVTSSEETCRDTASKGATINKNHNQSNQKVDCTENIIPKCSNKNKEQDLFTSR
EKRFSLSDLADYSDVVGQTKANVMFMDRGVKHRIDSQNSQMDIELYNPGARLLVSAVQWL
HTIPSFTQISQKEQILLLQSNWKELFIMHAAEYSFCFDEDLTGYHVEAAKYQRRDKEIGS
ALEKNFPVPIR