New model in OGS2.0 | DPOGS200904  |
---|---|
Genomic Position | scaffold5:+ 92355-105232 |
See gene structure | |
CDS Length | 1398 |
Paired RNAseq reads   | 9036 |
Single RNAseq reads   | 24711 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000672 (0.0) |
Best Drosophila hit   | knockdown, isoform A (0.0) |
Best Human hit | citrate synthase, mitochondrial precursor (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to citrate synthase [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to citrate synthase [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0004108 citrate (Si)-synthase activity GO:0005759 mitochondrial matrix GO:0005975 carbohydrate metabolic process |
InterPro families    | IPR016142 Citrate synthase-like, large alpha subdomain IPR010109 Citrate synthase, eukaryotic IPR019810 Citrate synthase active site IPR002020 Citrate synthase-like IPR016141 Citrate synthase-like, core |
Orthology group | MCL11120 |
Nucleotide sequence:
ATGGCTCTATTCAGGATCACATCATCAAAACTTATTGATATACAGAAAACATGCCCAACA
GCGACGATACTGCTGCGAAACTTAAGCGCGGAACAGACGAATCTTAAAAGTATCCTACAG
GAGAAGATCCCCAAAGAACAAGAGAAGATCAAAGAATTCCGTAAGAAGCATGGGGCCACC
AAAGTTGGCGAAGTCACCGTCGACATGATGTACGGTGGCATGAGAGGCATCAAGGGTCTT
GTTTGGGAGACGTCTGTATTGGATCCTGATGAGGGCATCCGTTTCCGTGGCCTCTCAATC
CCCGAGTGCCAACAGCAGCTGCCAAAAGCCAAGGGCGGAGAGGAACCCTTACCCGAAGGT
CTGTTCTGGCTTCTGGTGACCGGTGAAATACCAACCGAGGCTCAAGTGAAGGCTATTTCC
AAGGAATGGGCTCAAAGAGCTGAACTTCCCGCTCACGTGGTGACCATGTTGAACAACATG
CCCAGCAAGTTGCATCCGATGTCACAGTTCTCAGCAGCCGTTACAGCCCTCAACAGCGAG
TCGAAGTTCGCGCAGGCCTACTCCGAGGGTGTTCACAAGTCCAAGTATTGGGAGTATGTG
TACGAGGACTCTATGAATCTGATCGCTAAGCTGCCGGTTATAGCCGCTACTATCTACCGC
AACACCTATCGCGATGGTAAGGGCATTGGAGCGATCGATGACAACAAGGACTGGTCAGCC
AACTACTGCACCATGTTGGGCTTCGACGATCCCCAGTTCACAGAGCTCATGAGGCTATAC
CTCACCATCCACAGCGACCACGAAGGCGGTAACGTGTCTGCTCACACCACCCACCTCGTG
GGCTCGGCTCTAAGTGACCCCTACCTTTCATTCGCTGCTGGTCTCAACGGTCTCGCGGGA
CCTCTCCACGGACTCGCCAACCAGGAGGTATTGATCTGGTTGGAGAAACTGCGCAAGCAG
GTCGGTGATAACTTCACGGAGGAAGGCCTCAAGGAGTTCATTTGGAAGACACTTAAATCC
GGTCAAGTCGTGCCCGGATACGGTCACGCCGTGCTTAGGAAGACTGATCCCAGATACACC
TGCCAACGCGAATTCGCCCTCAAGCACCTTCCCAACGACCCCCTGTTCAAGCTTGTGGCA
GCGGTGTACAAAGTCGTTCCTCCAATCCTAACCGAGCTCGGCAAGGTCAAGAACCCGTGG
CCAAATGTCGACTCACACTCTGGTGTGCTCTTACAGTATTACGGTCTTAAGGAGATGAAT
TACTACACGGTGATGTTCGGTGTGTCTCGTGCTTTGGGTGTGTTGGCTCAGCTGATCTGG
TCCCGTGCTCTCGGTCTGCCCATAGAACGCCCCAAATCCCTCAGCACCGACCTCCTCATC
AAACAGATCGGCAAGTAA
Protein sequence:
MALFRITSSKLIDIQKTCPTATILLRNLSAEQTNLKSILQEKIPKEQEKIKEFRKKHGAT
KVGEVTVDMMYGGMRGIKGLVWETSVLDPDEGIRFRGLSIPECQQQLPKAKGGEEPLPEG
LFWLLVTGEIPTEAQVKAISKEWAQRAELPAHVVTMLNNMPSKLHPMSQFSAAVTALNSE
SKFAQAYSEGVHKSKYWEYVYEDSMNLIAKLPVIAATIYRNTYRDGKGIGAIDDNKDWSA
NYCTMLGFDDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAG
PLHGLANQEVLIWLEKLRKQVGDNFTEEGLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYT
CQREFALKHLPNDPLFKLVAAVYKVVPPILTELGKVKNPWPNVDSHSGVLLQYYGLKEMN
YYTVMFGVSRALGVLAQLIWSRALGLPIERPKSLSTDLLIKQIGK