New model in OGS2.0 | DPOGS200905  |
---|---|
Genomic Position | scaffold5:+ 111320-114691 |
See gene structure | |
CDS Length | 1293 |
Paired RNAseq reads   | 271 |
Single RNAseq reads   | 813 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000673 (1e-43) |
Best Drosophila hit   | peptidoglycan recognition protein LF (3e-39) |
Best Human hit | peptidoglycan recognition protein 3 precursor (1e-28) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC002790 [Tribolium castaneum] (2e-60) |
Best NR hit (blastx)   | PREDICTED: similar to AGAP005203-PC [Tribolium castaneum] (6e-47) |
GeneOntology terms    | GO:0005887 integral to plasma membrane GO:0006952 defense response GO:0042834 peptidoglycan binding GO:0045087 innate immune response GO:0009253 peptidoglycan catabolic process GO:0005515 protein binding GO:0008745 N-acetylmuramoyl-L-alanine amidase activity |
InterPro families    | IPR002502 N-acetylmuramoyl-L-alanine amidase domain IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria IPR015510 Peptidoglycan recognition protein |
Orthology group | MCL10276 |
Nucleotide sequence:
ATGGCTACAAAGGCAAGTAAATCCAATACAAATGGGATGACAATAATAGGAAATATCGAT
GATATGCAAATTATAAAAGAAATCAGTGATGAAGATAGTATTAATAGACCGAAAAAATCA
TGTTCTTTGAACACTCCTTTAAATCTTCCCAGTAATTTAGTTCCGAACACTGGAGCACCT
GTTTATGAAAGCGTCTCGGTTACAAATTCGGAAAATGTTCAGTTTGGTAACAATACATAT
TTTAATGGTCCAGTAATCATAAAACAAATAGTCCAACCTAAATCTGGCGTTGATAATGTT
TCCTATACTAAAACAGAAGAAACAGAAAACGAGGATTCCCAGAAGCCTCCTTGTGCCACA
TTGGATGAAACTTATATTAAAAAGAAAGAGATATTATTATGGCACAAGATAACATTCTCC
GCAGTATGTATTACAGTTGTTGGCTGTGTTGTGGCTCTCGTGCTTGTTTTACAAAACAAA
AGTGATGATCAAATTCATACAAATGCACAGTCAGATTATGACAAAGAAGACAAACATACT
CGTTTGGTGGTGGGAGTTTGTGATGAAAATTTTCAACTTGTTATAATATCGGTACTCCTG
TTATCATTAACATTTTTGTTAGTTTCTTACTCATTACTAACACCGAGTGTTAAGAAAATA
AATAATGGTGTGGACATAAACCATCATTTGAACTGTGTCAATAAAAATTGCATGTTCTGC
AAGAAGACAGCAAATTCATTGCTGATAGCACCAAATCATTTGCGGATAGTGTCCAGATCG
GACTGGTTGTCACAGACTGTTGAAGGCGAGGTGAACATGCTTCGTCAACCGGTACCATGG
GTCATTATATCTCACACTGCCACCGAAAGCTGCTATACACAGAGTGAATGTGTTCTACGT
GTAAGATTGATACAAATGTATCATGTTGAAGCTCGAAAGTGGTCAGATATTGGGTACAAC
TTTCTGGTGGGAGGAGATGGTTCGGTGTACCATGGTCGTGGCTGGAACATAGAGGGGGCT
CATACAAAAGGTTACAACAAATATAGTATCGGAATAGCTTTTATTGGTACATTCAACACC
ACTCCGCCTCCAAAACAGCAAGTTGAAGCCTGCGAGAAACTTCTCAAGCTGGGAGTTGAA
TTGGGTAAACTCGCCAAAGACTACAAACTGTTTGCCCACAGGCAATTCATGTCAACTCTC
AGTCCAGGTGATACAGTTTATGATATCATCAAGGAATGGCCACATTTTGTCAACAATTTG
ACAGACACCCAGTCATTGATACCCAATTATTAA
Protein sequence:
MATKASKSNTNGMTIIGNIDDMQIIKEISDEDSINRPKKSCSLNTPLNLPSNLVPNTGAP
VYESVSVTNSENVQFGNNTYFNGPVIIKQIVQPKSGVDNVSYTKTEETENEDSQKPPCAT
LDETYIKKKEILLWHKITFSAVCITVVGCVVALVLVLQNKSDDQIHTNAQSDYDKEDKHT
RLVVGVCDENFQLVIISVLLLSLTFLLVSYSLLTPSVKKINNGVDINHHLNCVNKNCMFC
KKTANSLLIAPNHLRIVSRSDWLSQTVEGEVNMLRQPVPWVIISHTATESCYTQSECVLR
VRLIQMYHVEARKWSDIGYNFLVGGDGSVYHGRGWNIEGAHTKGYNKYSIGIAFIGTFNT
TPPPKQQVEACEKLLKLGVELGKLAKDYKLFAHRQFMSTLSPGDTVYDIIKEWPHFVNNL
TDTQSLIPNY