New model in OGS2.0 | DPOGS200916  |
---|---|
Genomic Position | scaffold5:+ 587431-589104 |
See gene structure | |
CDS Length | 1047 |
Paired RNAseq reads   | 13 |
Single RNAseq reads   | 43 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000684 (2e-58) |
Best Drosophila hit   | reduced ocelli (2e-27) |
Best Human hit | reticulon-4 receptor precursor (4e-13) |
Best NR hit (blastp)   | leucine-rich transmembrane protein [Aedes aegypti] (7e-33) |
Best NR hit (blastx)   | GK18170 [Drosophila willistoni] (8e-34) |
GeneOntology terms    | GO:0005515 protein binding GO:0008056 ocellus development |
InterPro families    | IPR001611 Leucine-rich repeat IPR003591 Leucine-rich repeat, typical subtype |
Orthology group | MCL18133 |
Nucleotide sequence:
ATGATCTGCGATGGAGCGCAGACAATATGCCCAAGCGAATGTATCTGCCGCGGTACTTTC
GACCTCGAGGTCGGGAACGCGCTAAGTGTCGAATGTACGCGGGGTGACATGCGATCAATA
CCCGTAGATTTTGTCGACCACAAAGCTCAGGTCATCATCATATCTGCACCTAAAGAGAAA
CCTAATTATCTCACCATAGGACCCATCTTTACTCAACCGATTCCTTTTGTGAATCTACGT
GAACTGCATATTGTTAATTCCAACGTCCCTTCCATCGGACAATATTCGTTTTGGGGCCTT
CAGAATTTAAAACTCATAAATCTGACTTACAATAATCTAACGAGTATCGGAGCGGACAAT
TTTCGAGGCCTCATAAACCTCACGGACTTGCATCTCGACCATAACAATATTGAACAAATG
CCAAGTGAGACATTCCGACATTTGACTGCTTTAAGGACTTTAAACCTGGCTCATAATCAA
ATTTCTACTTTAGTGCCTCGCCTTTTTCGTATGTTAGCGAAACTTTTGTTTATGGATTTA
AGCTATAATCCTTTGGCTGACCTCAATCCTGAGAATAAAATGCATACATTAGATGAAGAA
GACTTGCAAAGACTAGAAGCCATTGCTCATTTAAATTTAAAAAAGAATCTTTGGCGATGC
GATCAGTGTTCGTCTACCACAATGCTTGTTTTTATGGCAACAACAGTTCTTAATACAACG
ATTCGCCAACTAAAATGTCATACTCCTTTGAGACTCAACGGTGTAACCTTTGGGGAGTTA
ACTTATGAAAATTTAGAACCATGTTCGACAACTCATGAAGCACAAATGAGTGTGATAGCA
GGATTGATGTTGTTGTGTGTAGCTGTGCTTGCAGTTGTTACCACAGCTTTGTGCTGTTCT
AGGCGACGAGCCGCACACTATTACACAAATGAAGAGAAAAGACGAGAACATGAGCATGAT
CATCCTGAGGAATTATTGGGTCGTACGGAAATTGGAAGTGTTGCAACTATCCACGCCCCC
TACCACTTGGTGGCGAAAGGCAGTTAA
Protein sequence:
MICDGAQTICPSECICRGTFDLEVGNALSVECTRGDMRSIPVDFVDHKAQVIIISAPKEK
PNYLTIGPIFTQPIPFVNLRELHIVNSNVPSIGQYSFWGLQNLKLINLTYNNLTSIGADN
FRGLINLTDLHLDHNNIEQMPSETFRHLTALRTLNLAHNQISTLVPRLFRMLAKLLFMDL
SYNPLADLNPENKMHTLDEEDLQRLEAIAHLNLKKNLWRCDQCSSTTMLVFMATTVLNTT
IRQLKCHTPLRLNGVTFGELTYENLEPCSTTHEAQMSVIAGLMLLCVAVLAVVTTALCCS
RRRAAHYYTNEEKRREHEHDHPEELLGRTEIGSVATIHAPYHLVAKGS