| New model in OGS2.0 | DPOGS207445 |
|---|---|
| Genomic Position | scaffold4357:- 173-1550 |
| See gene structure | |
| CDS Length | 420 |
| Paired RNAseq reads | 1 |
| Single RNAseq reads | 76 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001188 (1e-42) |
| Best Drosophila hit | ND |
| Best Human hit | exosome complex exonuclease RRP43 (6e-29) |
| Best NR hit (blastp) | PREDICTED: similar to exosome component 8 [Tribolium castaneum] (7e-32) |
| Best NR hit (blastx) | PREDICTED: similar to exosome component 8 [Tribolium castaneum] (2e-31) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0016787 hydrolase activity GO:0000178 exosome (RNase complex) GO:0004518 nuclease activity GO:0004527 exonuclease activity GO:0003723 RNA binding GO:0005634 nucleus GO:0006364 rRNA processing GO:0006396 RNA processing GO:0000175 3'-5'-exoribonuclease activity GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
| InterPro families | IPR001247 Exoribonuclease, phosphorolytic domain 1 IPR020568 Ribosomal protein S5 domain 2-type fold |
| Orthology group | ND |
Nucleotide sequence:
ATGATTACTACAAAATATAAGACCGCCTCCTTACCAGCTCAGATACAGGAATTAGCAAAA
CCTAAAGCAGAAGAACCAGATGTAGGCTTTTTAATAACTAATGTGGAGCTTCTTCCATTA
TGTTCATCAAAATTCCGTCCTGGACCTCCCTCAGACCACGCTCAAGTTGTCAGCAATGTT
GTATCAGATATAGTTACGAACTCTAAATGTATAGACATGAAAGATTTATGCATAGTGCCG
GACAAACTCTCATGGGTGTTATATTGTGATATGGTTTGCTTGGACTATGACGGCAGTGTT
GTTGATGCCTGCTTAATAACACTCATGAGCAGCCTCAAAACATGTATGATTATTTTTATT
TTTTTTATTTTCAGTTTTGTAATTTTAGTGTTAAATAAAACTAATGAATACTTGCAATAG
Protein sequence:
MITTKYKTASLPAQIQELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNV
VSDIVTNSKCIDMKDLCIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSLKTCMIIFI
FFIFSFVILVLNKTNEYLQ