| New model in OGS2.0 | DPOGS210658 |
|---|---|
| Genomic Position | scaffold635:+ 40303-49299 |
| See gene structure | |
| CDS Length | 2586 |
| Paired RNAseq reads | 8817 |
| Single RNAseq reads | 23410 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001644 (5e-38) |
| Best Drosophila hit | La related protein, isoform D (1e-85) |
| Best Human hit | la-related protein 1 isoform 1 (8e-73) |
| Best NR hit (blastp) | lupus la ribonucleoprotein [Aedes aegypti] (6e-123) |
| Best NR hit (blastx) | lupus la ribonucleoprotein [Aedes aegypti] (5e-97) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0035071 salivary gland cell autophagic cell death GO:0048102 autophagic cell death GO:0003674 molecular_function GO:0005829 cytosol GO:0051225 spindle assembly GO:0007076 mitotic chromosome condensation GO:0051299 centrosome separation GO:0000001 mitochondrion inheritance GO:0007053 spindle assembly involved in male meiosis GO:0005739 mitochondrion GO:0007140 male meiosis GO:0035186 syncytial blastoderm mitotic cell cycle |
| InterPro families | IPR006630 RNA-binding protein Lupus La IPR011991 Winged helix-turn-helix transcription repressor DNA-binding IPR006607 Protein of unknown function DM15 |
| Orthology group | MCL12187 |
Nucleotide sequence:
ATGTCCACCGTAGTGACTTTAACCGCCCCGCCCCGGCCTCCGGACCCGGGTGCTGGCACG
TATAGGCTGTCGGCTAACGCTTTGTCATTGAGTGCGGAGGCTGTACCCGCTGGTAGTGCG
CCCGCTACCAGCTGCTCGCCGAAACACCCACCACCTATCATGTCCCCGCCCCAGCTCCGC
GTGGCTCAGCCGGGCCTGCCGCAGGTGGTGCTCCGGTACGGGCTCGGGGCCCTGCCGCTC
GCCCCGCCGATCGCGCAGGCCTTCTACTACGGCAGCGCCCCCTACGTCGGACTGGACCAG
GCGACGCTCAAAGACCTCATCAAGAAGCAGATCGAGTACTACTTCAGTCCCGATAACCTG
GCCCGGGATTTCTTCCTGCGGCGTAAGATGTCCCCGGACGGCACCATACCCGTCACCCTG
ATCGCGTCCTTCCACCGCGTGAGGGCGCTCACCGCTGACGTGCAGCTCGTGCTGGACGCC
ATACGCGACTCGGACAGGCTGCAGCTGATAGGAGGGTTCAAGGTCAGAACGGCGTTCGAG
CCTACAAAATGGCCGATACTGGATCTACCCTCCAACTCCGATGACGGCGAGGGGCAGGAG
AAGAACGAGAGAGACGAACACACAGACAGACACGACGCGGACGCGGAGAGAATACACGGA
GCGCGACACGAGGAGCCGGAGCAGAAGACTGGACACGAGGAGCGGCCAGCGGAGCGGGAC
CAGGCCGCGCATGCTGACGCTGAGGAGGCGGGGGCCGGCGAGGACGGAGCGGACGCGGCG
CTGAAGGACGGAGAACGGACTCTAGGGAACGAGGCGAATCCCGAACCGCCGTCAGAAAAA
CAGGATGAAGACAAACGAGCGCCGGCGGATGGGAAACAGGAAGCGGATGTGGACAGCCAG
GAGAAGGATATCAACAACGACCCGCCGCTGCAACCGGATGTAGAGAAGCCCGGGGAGAAG
AGACGTAAAAAGCAAATGGTCGGCATCTTCCCCCTGGCGACCATGGGCGGGCCCCTAGTG
GCGCCCGTGTCCAGTCTGCTGAGAGCCGTCCCTCCGCCGCCGCTGCCCAGGATATTCCGC
ACACGTCCGGGGACCGCGCCCCTCGCCGTGGATCACCTCAACCCTGACGTCCCGGAGTTC
GTCCCCCAGGCCAGGAGAAACGAGGAACCGATGGATTCCGCGGAGAAACAGGACAATGGT
TCCAGTGCATCATCAGACAGAGGAGATGCTGATGTATGGACGGAGGTGAAGCGCCGTACC
AAGGCGGGGTCTCGGGAGCGTGCGCCCCGACCTGACGCGGCGGACGACGAGCCCAAGGAG
GAGCTGCACTTCCAGCTGGATGAAGAGCTGGAGCTGCCCCCGCCCAGAAACAACACCTTC
ACTGACGGCTGGTCGGACGAGGAATCTGATCTCGAGCTGTCGGACCGTGACATCGGCCGG
CTGCTTATAGTGACTCAGACCGCGGCCCGCGCGCCCAAACACGACGGACACGACCGACAG
GGCGACTGGGCCACCAGGACCAAGATCACGCAGGACCTGGAGCAGCCGAACGAGCAAAAG
ACAGAGGGCGGCGGTAAGGCAGCCCGCAGACGAACGGCGCGCTTCTACGCGGCTAGCAAG
GATCCGCACGCTACGGACGTTATAAGCAGCAGGAAGCACAAGACGCGGCACAGCCTGAAC
CCGCCGGTGGAGCACCATGTGGGGTGGATCATGGACGTGCGCGAGCACAGGAGACAGCAC
AGGGACAGCACGGGATCGTCCCTGGGAACGTCACCCACCCTGGGCTCGTCCTGCGGCTCC
GTCCCTCAGTCCCTGCCGGCCTTCCATCACCCCAGCCACGGGCTGCTGAGAGAGAACCAC
TTCACACAGCAGGCCTACCACAAGTATCACTCGAGATGTCTTAAAGAACGCAAGAAGCTG
GGCATAGGCCAGTCCCAGGAGATGAATACTCTCTTCAGATTCTGGTCCTTCTTCCTCAGA
GATCACTTCAACAGGACTATGTATAATGAGTTTAGGAGCCTAGCTACTGAGGACGCAGCG
GCAGGATTCCGCTACGGCCTGGAATGTCTGTTCAGATTCTACTCGTACGGCCTGGAACGC
AAGTTCAGACCTGAGCTGTACCAGCACTTCCAGGTGGAGACGCTAGCTGACTATGAGAAA
GGTCAGCTGTACGGCCTGGAGAAGTTCTGGGCGTTCTTGAAGTACTACAAGCACGCGGCG
GCACTTAACGTGGAGCCTACACTTAAAGCACACCTCGCTAACTTCAATACCGTGGAGGAC
TTCCGGGTGCTGGAGCCCCAGCTGAACGAGCTGCTAGCGGCGGGCGGGCCGGGGGCTGGC
AGGCCCCACGCCCGCGTGTACGAGAGACATCGCTCCGTGTCCGAGAGCGAGAGGACCAAG
GCCTGTCGGAACACGTTCAGCCGTCCCGCGGCCGCCACCAACCGCGGTCGTGCTGGTTCC
TGCGGCGCCCAGGGTACAGTCGCCGCTGAGAGGAGGCAGCGCTGCAGCCTAGCCGCGGTG
GCCGCGAGACTGGAGCCGTGGTCCGGGGCTACGTCGGAGCGGCGCACACCGACACACATA
CATTAA
Protein sequence:
MSTVVTLTAPPRPPDPGAGTYRLSANALSLSAEAVPAGSAPATSCSPKHPPPIMSPPQLR
VAQPGLPQVVLRYGLGALPLAPPIAQAFYYGSAPYVGLDQATLKDLIKKQIEYYFSPDNL
ARDFFLRRKMSPDGTIPVTLIASFHRVRALTADVQLVLDAIRDSDRLQLIGGFKVRTAFE
PTKWPILDLPSNSDDGEGQEKNERDEHTDRHDADAERIHGARHEEPEQKTGHEERPAERD
QAAHADAEEAGAGEDGADAALKDGERTLGNEANPEPPSEKQDEDKRAPADGKQEADVDSQ
EKDINNDPPLQPDVEKPGEKRRKKQMVGIFPLATMGGPLVAPVSSLLRAVPPPPLPRIFR
TRPGTAPLAVDHLNPDVPEFVPQARRNEEPMDSAEKQDNGSSASSDRGDADVWTEVKRRT
KAGSRERAPRPDAADDEPKEELHFQLDEELELPPPRNNTFTDGWSDEESDLELSDRDIGR
LLIVTQTAARAPKHDGHDRQGDWATRTKITQDLEQPNEQKTEGGGKAARRRTARFYAASK
DPHATDVISSRKHKTRHSLNPPVEHHVGWIMDVREHRRQHRDSTGSSLGTSPTLGSSCGS
VPQSLPAFHHPSHGLLRENHFTQQAYHKYHSRCLKERKKLGIGQSQEMNTLFRFWSFFLR
DHFNRTMYNEFRSLATEDAAAGFRYGLECLFRFYSYGLERKFRPELYQHFQVETLADYEK
GQLYGLEKFWAFLKYYKHAAALNVEPTLKAHLANFNTVEDFRVLEPQLNELLAAGGPGAG
RPHARVYERHRSVSESERTKACRNTFSRPAAATNRGRAGSCGAQGTVAAERRQRCSLAAV
AARLEPWSGATSERRTPTHIH