New model in OGS2.0 | DPOGS213510  |
---|---|
Genomic Position | scaffold1176:- 27320-29922 |
See gene structure | |
CDS Length | 1059 |
Paired RNAseq reads   | 3980 |
Single RNAseq reads   | 15752 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012539 (2e-49) |
Best Drosophila hit   | rhodopsin 3 (7e-113) |
Best Human hit | melanopsin isoform 1 (2e-34) |
Best NR hit (blastp)   | UV opsin [Danaus plexippus] (0.0) |
Best NR hit (blastx)   | UV opsin [Danaus plexippus] (0.0) |
GeneOntology terms    | GO:0008020 G-protein coupled photoreceptor activity GO:0007604 phototransduction, UV GO:0009589 detection of UV GO:0007602 phototransduction GO:0004930 G-protein coupled receptor activity GO:0016021 integral to membrane GO:0007186 G-protein coupled receptor protein signaling pathway GO:0016039 absorption of UV light GO:0007601 visual perception |
InterPro families    | IPR000276 GPCR, rhodopsin-like, 7TM IPR001760 Opsin IPR000856 Opsin RH3/RH4 IPR017452 GPCR, rhodopsin-like superfamily |
Orthology group | MCL16947 |
Nucleotide sequence:
ATGCTGATAGACGGTCTCACAGGCGAGGACCTAGCTGCAGTACCGGAGCACTGGCACACC
TACCCCTCTCCACCAGCCAGCGCCCACACGGCCCTAGCTCTCCTCTACTGCTTCTTCACA
GCTGCAGCACTCATTGGAAATGGAATGGTCATATTCATTTTTCTAACAACGAAGAGTTTG
CGGACATCTAGCAACTTACTGATTCTAAACCTCGCAATTAGCGATTTCATTATGATGGCC
AAAGCTCCAATCTTCATATATAATAGTGCATTGCGCGGCTTTGCTGCGGGACCCGTCGGT
TGTCAAATATTTTCCGTAATGGGTGCCTATAGCGGCATTGGAGCGAGTATGACCAACGCT
TGTATTGCCTACGACAGACATTCTACGATCACTCGACCACTTGACGGGCGACTGTCGCAA
GGGAAAGCTTTGTTGATGATAGCCTTTGTATGGATATATGCGACGCCCTGGTCACTTCTG
CCACTGTTCAAAGTATGGGGCAGATTTGTACCAGAGGGCTACTTAACATCATGCACGTTC
GATTACTTGTCCAATACTTTCGACACTAAATTGTTTGTGGCCTGTATATTCACTTGTAGC
TACGTCTTCCCTATGACCATGATTATATATTTCTACAGTGGCATTGTCAAACAAGTGTTC
GCACATGAAGCAGCATTGAGAGAACAAGCTAAGAAAATGAATGTTGAATCTCTGCGCTCG
AATCAAAACGCCTCCGCGGAGTCCGCTGAGATACGAATTGCTAAAGCGGCTCTCACCGTC
TGCTTCCTGTTTGTGGCGTCTTGGACGCCGTACGGGGTGATGGCGCTCATAGGAGCCTTC
GGGGATCAACGACTTCTCACACCCGGGGTAACTATGATACCAGCCGTAGCGTGCAAAACT
GTAGCCTGCATCGATCCTTGGGTTTATGCAATCAGTCATCCCAAGTACAGGCAAGAGCTT
CAGCGTCGCATGCCTTGGCTTCAAATCAATGAGCCCGATGATAATGTTTCAAACACTACT
AACGGCACTACCAATTCTACGGCTACGCCTACCGCCTAA
Protein sequence:
MLIDGLTGEDLAAVPEHWHTYPSPPASAHTALALLYCFFTAAALIGNGMVIFIFLTTKSL
RTSSNLLILNLAISDFIMMAKAPIFIYNSALRGFAAGPVGCQIFSVMGAYSGIGASMTNA
CIAYDRHSTITRPLDGRLSQGKALLMIAFVWIYATPWSLLPLFKVWGRFVPEGYLTSCTF
DYLSNTFDTKLFVACIFTCSYVFPMTMIIYFYSGIVKQVFAHEAALREQAKKMNVESLRS
NQNASAESAEIRIAKAALTVCFLFVASWTPYGVMALIGAFGDQRLLTPGVTMIPAVACKT
VACIDPWVYAISHPKYRQELQRRMPWLQINEPDDNVSNTTNGTTNSTATPTA