| New model in OGS2.0 | DPOGS211882 |
|---|---|
| Genomic Position | scaffold127:- 42299-50733 |
| See gene structure | |
| CDS Length | 1437 |
| Paired RNAseq reads | 15 |
| Single RNAseq reads | 56 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007598 (1e-144) |
| Best Drosophila hit | Ligand-gated chloride channel homolog 3, isoform A (3e-167) |
| Best Human hit | gamma-aminobutyric acid receptor subunit beta-3 isoform 1 precursor (7e-102) |
| Best NR hit (blastp) | ligand-gated chloride channel homolog 3 [Apis mellifera] (0.0) |
| Best NR hit (blastx) | ligand-gated chloride channel homolog 3 [Apis mellifera] (2e-176) |
| GeneOntology terms | GO:0005886 plasma membrane GO:0004890 GABA-A receptor activity GO:0016021 integral to membrane GO:0005230 extracellular ligand-gated ion channel activity GO:0045211 postsynaptic membrane GO:0006811 ion transport |
| InterPro families | IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006028 Gamma-aminobutyric acid A receptor IPR006201 Neurotransmitter-gated ion-channel IPR002289 Gamma-aminobutyric-acid A receptor, beta subunit IPR018000 Neurotransmitter-gated ion-channel, conserved site |
| Orthology group | MCL10909 |
Nucleotide sequence:
ATGAAGCGGCAGTGTGATGACCGCGAGGGTGTCACCCGCGCCTCCACACCGCCTGCAGCA
GCTCTTCCCGGTTCTTATGATCATGCTGGCGCTCTTAATTTCTTTGGCTCCAGCACGAAC
GTCACGCAGACGGTGTCACGCATCCTCGACGGATATGACATACGTCTGAGACCAAATTTC
GGAGGGGAGCCCCTCTATGTTGGAATGGACCTCACCATAGCTAGCTTCGACGCTATCTCA
GAAGTAAATATGGATTACACAATCACCCTGTATCTAAATCAGTATTGGAAGGATGAAAGA
TTAGGTTTCGGGATGCAGGACGAGGTTCTCACTTTGTCGGGAGACTTCGCTGATAAGATA
TGGGTTCCGGATACTTTCTTCGCGAATGATAAAAATAGTTTTCTCCACGACGTGACGGAA
CGCAACAAGCTGGTGAGACTGGGCGGTGACGGTGGCGTGACATACGGCATGAGGTTCACG
GCGACCCTGGCCTGCATGATGGACCTTCATTACTACCCCCTGGATAGTCAGAACTGCACC
GTCGAGATCGAAAGCTATGGATACACAGTCTCCGATGTGGTGATGTACTGGAAGGATACG
CCAGTCCGTGGAGTCGAGGATGCAGAGCTGCCACAATTCTCTATATTAGGACATGAAACT
AACGACCGAAAGGAGAAGTTGGCGACAGGCGTCTATCAGAGACTGTCTTTGAGCTTCAAG
TTGCGTCGGAATATAGGTTATTTTGTGTTTCAAACCTATTTGCCCAGTATTTTGATTGTG
ATGCTGTCCTGGGTCTCGTTTTGGATCAATCATGAAGCTACTTCGGCCAGAGTTGCTTTG
GGTATAACAACCGTTCTAACAATGACTACGATCAGCACGGGCGTCCGCAGCAGTCTTCCT
CGTATCTCCTACGTGAAAGCTATAGACATCTACCTGGTGATGTGTTTCGTATTCGTATTC
GCCGCCTTGTTGGAGTACGCAGCCGTCAACTACACGTACTGGGGAGCGCGGGCCAGGAAA
CGGGCCAAGTTAAAGAACAGAGAGGTCCCCACCAGCACCAGCGTCGATAAGGATTTGAGA
AGCGGTCCTCGGTCCCCTGAGGAGATCATAGCTCTCCGTGAGTGTCCCGGGGGCCGCGCG
TCCCCCCTGCCGGGGCTGCGATCACGACCTCTAGCACCTTCCGGAGCACCACCCTCTCTC
CGCATACAGCGGGACCACAACCTTCGGTACAGGACGCGGACCCACTCCCGGAACTATACC
AATGGATCCAACAAGCCGAAGATGATACACGCGTTGAAGAAGGGCGCCACGGTCATCAAG
GCTTCTATGCCGAAGATACGTGACGTGAACGTCATAGACACGTACTCCAGAGTAATATTT
CCGATATGTTTCCTCATCTTCAACTCAGTGTACTGGGTGTTTTATATATTTGACTAA
Protein sequence:
MKRQCDDREGVTRASTPPAAALPGSYDHAGALNFFGSSTNVTQTVSRILDGYDIRLRPNF
GGEPLYVGMDLTIASFDAISEVNMDYTITLYLNQYWKDERLGFGMQDEVLTLSGDFADKI
WVPDTFFANDKNSFLHDVTERNKLVRLGGDGGVTYGMRFTATLACMMDLHYYPLDSQNCT
VEIESYGYTVSDVVMYWKDTPVRGVEDAELPQFSILGHETNDRKEKLATGVYQRLSLSFK
LRRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLP
RISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGARARKRAKLKNREVPTSTSVDKDLR
SGPRSPEEIIALRECPGGRASPLPGLRSRPLAPSGAPPSLRIQRDHNLRYRTRTHSRNYT
NGSNKPKMIHALKKGATVIKASMPKIRDVNVIDTYSRVIFPICFLIFNSVYWVFYIFD