| New model in OGS2.0 | DPOGS212816 |
|---|---|
| Genomic Position | scaffold6103:+ 131-7609 |
| See gene structure | |
| CDS Length | 3219 |
| Paired RNAseq reads | 1236 |
| Single RNAseq reads | 3306 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000760 (0.0) |
| Best Drosophila hit | CG17209 (0.0) |
| Best Human hit | DNA-directed RNA polymerase III subunit RPC1 (0.0) |
| Best NR hit (blastp) | AGAP004703-PA [Anopheles gambiae str. PEST] (0.0) |
| Best NR hit (blastx) | AGAP004703-PA [Anopheles gambiae str. PEST] (0.0) |
| GeneOntology terms | GO:0006383 transcription from RNA polymerase III promoter GO:0003899 DNA-directed RNA polymerase activity GO:0005666 DNA-directed RNA polymerase III complex GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0032549 ribonucleoside binding |
| InterPro families | IPR006592 RNA polymerase, N-terminal IPR015700 DNA-directed RNA polymerase III largest subunit IPR007081 RNA polymerase Rpb1, domain 5 IPR000722 RNA polymerase, alpha subunit IPR007066 RNA polymerase Rpb1, domain 3 IPR007083 RNA polymerase Rpb1, domain 4 IPR007080 RNA polymerase Rpb1, domain 1 |
| Orthology group | MCL11440 |
Nucleotide sequence:
ATGGTCATCCCCACAAACAAGTGGACTGCCTTATTAGTTTTCATCCAAAATTTATTATTC
CAGCCCAAAAAACCGGGTCGTGGTCTGGTTCAAAGGCTGAAAGGCAAGCAAGGTCGCTTC
CGTGGGAATCTATCAGGAAAGAGAGTGGATTTTTCAAGCAGAACTGTCATCTCACCGGAT
CCCAACCTACAGATACAGGAGGTGGGTGTTCCTGTGCATGTGGCCAAGATCCTGACGTAC
CCGGAGCGCGTGTTCCCGGCCAACCTCCAGTGGCTCCGACAGCTGGTGAGGAACGGCCCG
GACGTTCACCCGGGGGCCAACTACGTCCAGCAACGAGGGGTCAGCCACAAGAAGTACCTC
AAGTACGGGAACAGGGACAAGATTGCGCAGGAGTTGAAGTGCGGTGACACAGTGGAGCGC
CATCTGGTGGACGGAGACGTGGTGCTGTTCAACCGCCAGCCGTCACTGCACAAGCTGTCC
ATCATGTGTCACAGGGCGAGGGTACAGCCGCAGAGGACGTTCCGCTTCAACGAGTGCGTC
TGCACTCCTTACAACGCCGACTTCGACGGAGACGAGATGAACATGCACCTGCCGCAGACG
GAGGAGGCGCGGGCGGAGGCGCTCATACTCATGGGGAACAAGTCTAACCTGGTGACTCCT
CGGAACGGCGAGCTCCTGATCGCTGCGACCCAGGACTTTATAACGGGTGGGTACCTCATC
ACTCAGCGGGACAGTTTCTTCACGCTGCCGGAAGCCCGCCAGCTGGTCGCGTGTCTGCTG
GCGGGGCCCGACTCCACCATGAGGGTGGACATGCCGCCGCCAGCCATCCTCAAGCCGAGG
ATGCTTTGGACCGGCAAACAGATATTCAGTCTGATAATGAAGCCCAACAAGCGGTGTGAG
GTGAAAGCCAACTTGGAAACGAAGGGCAAGAACTACACCGGCAACCAGGACATGTGCGTT
CAGGATTCATATGTTATAATTCGTAACTCGGAGCTGATCTGCGGTTCCATGGACAAGAGC
ACCCTCGGATCTGGCACCAAGAACTCCGTGTTCTACATCCTGTTGAGGGACTGGGGCGAG
GAGTACGCCGTCAGGGGCATGTGGAGGCTGGCGCGTATGGCCTCCTACTACATGATGAAC
CGCGGGTTCAGCTTCGGCATCATCGACGTGACGCCCGGCAACAAACTCATTGAGGCCAAG
AACAAGCTGCTGGAGTCAGGGTACTCTAAGTGCGACGGATATATCCTGGAGATGGAGAAA
GGAACCCTGCAGTGTCAACCTGGCTGTTCCATGGAGGAGACCCTAGAGGCGATCATGCTC
AGCGAGCTCAGCAGCATTAGAGAACTGGCCGCCAAGGCTTGTTTCCGCGAGCTGCATCCA
ACGAACGCCCCGCTCATCATGGCTCAGAGCGGATCCAAGGGTTCCAACATCAACATATCT
CAGATGATAGCGTGCGTGGGCCAGCAGGCGCTGAACGGGAAACGTGTGCCGAACGGCTTC
GAAGATCGCTCCTTACCACACTTCGAGAGACACTCAAAAATCCCTGCCGCTCGCGGGTTC
GTGGAGAACAGCTTCTATTCAGGGTTGACCCCCACCGAGTTTTTCTTCCACACGATGGGC
GGAAGAGAGGGTCTCGTGGACACAGCCGTCAAGACGGCCGAGACAGGATACTTACAGAGA
AGACTGGTTAAGTCGTTAGAGGACCTGGTGCTCCACTACGACATGACAGTCCGCAACGCT
ACCAGCGAGGTGGTTCAGTTCCGCTACGGCAGCGACGGCCTCGACCCCAGCTACATGGAG
GGCCGCGACAGACCCGTCGACCTGACGCGCGTACTGCGACACGTGCGGGCCAGCTGTCGC
ACGCAAGACGAGGAGCCTCTGGACGGTGAGGGCATCGTGGTGGCGGCGGAGGAGACGCTC
GCTCTGGACGACTTCAAGACCTGTCCGCCGGAGTTCAAGGCGGAACTGCTTGAGTTCCTG
AAGGGCACGGCGGCCAAAGTGCGGTCTCTCCGCGAGCGATACGCGTCAGCCGGTCCCGTG
GCCTTACAGCTGGAGCGACTGACCCTCACGCAGCTGGTGCGGTTCATCAGAGTGTGTCAC
GAGAAGTATCAGAGGAGCATCATCGAACCAGGCACGGCCGTGGGGGCTCTGGCCGCGCAG
AGTATCGGCGAGCCGGGCACCCAGATGACATTGAAGACCTTCCACTTCGCAGGCGTCGCC
TCCATGAACATAACGCAGGGTGTGCCGCGTGTCAAGGAGATCATTAACGCGTCAAAGAAC
ATATCCACCCCCATCATCACGGCCGAGCTCATGGAGCCCACCGACCAGGAGTTCGCCAGG
AGGGTCAAAGGAAGAGTCGAGAAAACTACCCTCGGAGAGATAACGACGTACATAGACGAG
GTGTACCTCCCGCACGAGTGTTTCCTGCTGGTGAGGCTGGATGCTGAGAGAATAAGACTG
CTGTGTCTCGAGGTGGACGTGCACTCCATCGTGTACTCAATCTGCACGTCGAAGCTGAAG
CTGAAGCCGGGGAACGTCCAGGCCGTGTCTGAGTGGGCCATCAAGGTACATGCGGAGGCG
AGCAAGCACGGGGGGTGGCTGAACGTGGCGCTGCAGCAGCTCGCCAGGCAGCTGCCCTCC
GTGGTCGTGAAAGGACTCAGTAAGGTCTCCCGAGCTGTCATAGCGTGTGACGACACGGGA
CCCGTTAATAGGTACAAGTTATGCGTGGAGGGGGACGGTCTCCGGGAGGTGATGGCCACG
TACGGCATCGACGGCCGACGGACCACCTCCAACAACATCCTGGAGGTGTTCCACACGCTG
GGTATAGAGGCAGCGGCCGGCACCATCATGAGCGAGGTGGAGGCGGTCATGGCGGGCCAC
GGCATGGCGGTGGATGGCCGCCACGTGGCGCTGCTGGCGGCGCAGATGTGTGCGCGGGGG
GAGGTGCTGGGGATCACCAGGTACGGACTCGCCCGGATGAAGGAGTCCGTGCTCAATCTG
GCCAGTTTTGAGAAGACAGCCGACCATTTGTTTGACGCGGCGTACTACGGCCAGAGGGAT
CGTATAGAGGGAGTCTCGGAGTGCATCATCCTCGGTGTCCCGGCCGGCATCGGCACTGGA
GTGCTGCAGCTGCTGCACAAACATGACCACACGACGTCGCAGCAACAGCACAAGCTGCTG
TTCGACGATCCCAAATATCATTGCTCAATATGGGAATAA
Protein sequence:
MVIPTNKWTALLVFIQNLLFQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPD
PNLQIQEVGVPVHVAKILTYPERVFPANLQWLRQLVRNGPDVHPGANYVQQRGVSHKKYL
KYGNRDKIAQELKCGDTVERHLVDGDVVLFNRQPSLHKLSIMCHRARVQPQRTFRFNECV
CTPYNADFDGDEMNMHLPQTEEARAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLI
TQRDSFFTLPEARQLVACLLAGPDSTMRVDMPPPAILKPRMLWTGKQIFSLIMKPNKRCE
VKANLETKGKNYTGNQDMCVQDSYVIIRNSELICGSMDKSTLGSGTKNSVFYILLRDWGE
EYAVRGMWRLARMASYYMMNRGFSFGIIDVTPGNKLIEAKNKLLESGYSKCDGYILEMEK
GTLQCQPGCSMEETLEAIMLSELSSIRELAAKACFRELHPTNAPLIMAQSGSKGSNINIS
QMIACVGQQALNGKRVPNGFEDRSLPHFERHSKIPAARGFVENSFYSGLTPTEFFFHTMG
GREGLVDTAVKTAETGYLQRRLVKSLEDLVLHYDMTVRNATSEVVQFRYGSDGLDPSYME
GRDRPVDLTRVLRHVRASCRTQDEEPLDGEGIVVAAEETLALDDFKTCPPEFKAELLEFL
KGTAAKVRSLRERYASAGPVALQLERLTLTQLVRFIRVCHEKYQRSIIEPGTAVGALAAQ
SIGEPGTQMTLKTFHFAGVASMNITQGVPRVKEIINASKNISTPIITAELMEPTDQEFAR
RVKGRVEKTTLGEITTYIDEVYLPHECFLLVRLDAERIRLLCLEVDVHSIVYSICTSKLK
LKPGNVQAVSEWAIKVHAEASKHGGWLNVALQQLARQLPSVVVKGLSKVSRAVIACDDTG
PVNRYKLCVEGDGLREVMATYGIDGRRTTSNNILEVFHTLGIEAAAGTIMSEVEAVMAGH
GMAVDGRHVALLAAQMCARGEVLGITRYGLARMKESVLNLASFEKTADHLFDAAYYGQRD
RIEGVSECIILGVPAGIGTGVLQLLHKHDHTTSQQQHKLLFDDPKYHCSIWE