| New model in OGS2.0 | DPOGS200778 |
|---|---|
| Genomic Position | scaffold4800:- 623-2716 |
| See gene structure | |
| CDS Length | 819 |
| Paired RNAseq reads | 202 |
| Single RNAseq reads | 526 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011987 (4e-89) |
| Best Drosophila hit | ND |
| Best Human hit | RNA pseudouridylate synthase domain-containing protein 1 (6e-31) |
| Best NR hit (blastp) | hypothetical protein AaeL_AAEL007487 [Aedes aegypti] (8e-51) |
| Best NR hit (blastx) | hypothetical protein AaeL_AAEL007487 [Aedes aegypti] (1e-47) |
| GeneOntology terms | GO:0001522 pseudouridine synthesis GO:0003723 RNA binding GO:0009982 pseudouridine synthase activity GO:0009451 RNA modification GO:0003674 molecular_function GO:0008150 biological_process GO:0005575 cellular_component |
| InterPro families | IPR020103 Pseudouridine synthase, catalytic domain IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F |
| Orthology group | MCL17168 |
Nucleotide sequence:
ATGGCTGTGGAGAAGTTATATGAGAGTGATGATTTCCTCATAGTGAATAAACCATACGAT
ATGTATATTAATTCTGACGATGAAAACGAGAAGAACACCTTGGTATGTCAAATAGCTAGC
CACGATTCACATTTATCAACATCGTCTAACCCGCTTCATTTCGTCCAACGTCTCGACTAC
GCCACTAGTGGTGTTATTTGCATCGCCAAGACCAAAACAGCGGCAGCCCAAGCGGGGAAA
TTGTTTGAGAAGAGATTGACTAAAAAATATTATGTTGCGGTCGTAAGGAAACATTTAAAG
TTTGAGTTAGCGGACATAAAGTATCCCATAGGCGTGGATCTGTCGCCAGAGAACAGTCAC
AAGATGGCGACGCAGACTGCTGATACAACTTGCGGCTCTCCAAGAGAGGCTCTCACTCGT
GTCCTCTTGTTGGAGACAGGGTTTTACGGTTCGGATCCTGTTAGTGTTGTGCTGCTGAAA
CCGATCACTGGTCGCCGGCATCAGCTCCGTGTGCATTGTCTCTCCATCGGCCACACTCTA
CTCGGAGACTACACGTACAGCGCTCCGGTGGACACTGTGCCGCATAGAATGTTTTTACAC
GCGACCAGACTGGTACTACCACTCCAAAAACAACCGCTCGATGTTCAGACTCTCATTCCG
TTCTTCAGCGATCCACAGTTCACCAGCAAGTGGAAGACCTGTAAAGTATATTATAAATAC
AGAACTAGAGAGGACTTTACAGCCGCCTGTGACGTCATCGACAGGAGTTATACGGTTGGT
ATAAAATATGACGAGTACAGTGCTAACAAGAAGTTATGA
Protein sequence:
MAVEKLYESDDFLIVNKPYDMYINSDDENEKNTLVCQIASHDSHLSTSSNPLHFVQRLDY
ATSGVICIAKTKTAAAQAGKLFEKRLTKKYYVAVVRKHLKFELADIKYPIGVDLSPENSH
KMATQTADTTCGSPREALTRVLLLETGFYGSDPVSVVLLKPITGRRHQLRVHCLSIGHTL
LGDYTYSAPVDTVPHRMFLHATRLVLPLQKQPLDVQTLIPFFSDPQFTSKWKTCKVYYKY
RTREDFTAACDVIDRSYTVGIKYDEYSANKKL