| New model in OGS2.0 | DPOGS215847 |
|---|---|
| Genomic Position | scaffold56:+ 194962-197481 |
| See gene structure | |
| CDS Length | 2520 |
| Paired RNAseq reads | 487 |
| Single RNAseq reads | 1305 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002947 (0.0) |
| Best Drosophila hit | CG9247 (1e-35) |
| Best Human hit | probable exonuclease mut-7 homolog (3e-38) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC002596 [Tribolium castaneum] (4e-86) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC002596 [Tribolium castaneum] (4e-84) |
| GeneOntology terms | GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process GO:0003676 nucleic acid binding GO:0005622 intracellular GO:0008408 3'-5' exonuclease activity GO:0016787 hydrolase activity |
| InterPro families | IPR002562 3'-5' exonuclease IPR002782 Protein of unknown function DUF82 IPR012337 Ribonuclease H-like |
| Orthology group | MCL15912 |
Nucleotide sequence:
ATGGACTTAAATAAGTTAGTCCATCAAAATCAAACAATAAAAATCATACCATCGTTAGAG
GACTCTCTACGAGGACTTGGCCTGAATAGTGATCTAGATGAAGAAACTGAGATTTGGTTT
AATCAATTGAAAATCAAATGGAAAACATGGAAGAAAAGCCCTACGATTGAGCGTCACTTT
GACTCATTTTTTCAGTTCTGTCAAGATCCCTTCAGAGTTGCCCTAGTGTGCATTGTCAAA
TGTGATGAACCAAAAGATCGTAAGCCTAAATCTCTCTCTTATTGCATACTTGAAATTATA
TTTAAATGGTCCCAGACAAATGGCAGATTACCTGAAGAGACTCTGAAACTTCCAGCGTAC
AATATAGCAACACAACAGAGAAATCAACATTTTCTTTATTTAGCAGTTAAAACTTATCAA
TTGTATACTATAAAAGAGACTGTACTTCCTCTTGTAAAAGATATGATAAGAAATGATAAT
TGCAAACAAGCATCACAAATTGTAATTGCAATGGAACTCTTTGATGAAATTCCTGTTGAA
GATTTACTGTTTCCATTGGTTTTGCAAGATACGCCAAACCTAATTGATGAATATTTGTCA
GAATCTCCAAATCAAATTCAACCATTTTTATTATTTTTAGATAGACTGTTAGACAAAAAC
TTTAGTATAAGAGACTATGCTCAAAAATTTATTGAAGAAAATAAAATTTATAATGTTAAA
TATGATAAAATTCATTATAAACCTCTGGGAAAATTAGTCGCTCGGCTTTGTAATAAATTT
AATGTTCCAATAGAGTCATGTAAAAACTTGAGTAAGAATCGTACCACAGGAGGGCTGAGG
TATTTAATTCATCAGAGATATGTTGAACACAACTTGAGCCCCTCAGTTTGGGATGATTTG
GTAAAAGATTCTTTGAAGCAAAGTACTGACTGTGCTAAAGAATTTGTTGATATGTTAGCA
ATGTATGACATAAATGAATCACTTAAGTGGTCTTCATATTTCGAAATATCAAATGATTGT
CTTCCTCATGCTCTTCAGAATTTAACAATAAAAGATAATCCTATAGAAGAAGAAAATTGG
GACTCAACTGACAATGCAGCTCAGAACTATTATAGACTTCCAATATCAGAAGAAAATATT
TTAATTATTGACACAGCAGAAAAGTTTGATGAATTAATCTCAAAGTTGTCAAATTGTCCT
ATCATCAGCTTTGATTGCGAATGGAAACCATCATTTGGTGCTGCTAAATCTCGAATGGCT
CTCATTCAAATTGGTACATTTGATCAAGTTTATCTTATTGACACTCTTATATTAAACAAC
AAGCAATACATGGGTAGTTGGTGCCGGTTTAATAAATATGTATTAGATAATGCGGAGATA
ATAAAATTGGGTTTTGGAGTTGAACAGGATCTGAATGAAATGAAGTCTTTAATTATTGGT
TTGAATAATATCAAGGTTAAAGGTGAAGGACTTTTAGATTTAGGTTTACTGTGGAAAAAT
CTTGTCAAATGTGGCTTGTCATTACCAAGTAACAGTGATAATGGAGGTAACAGTCTCAGC
TCTTTGGTCCAAACTTGCTTTGGATTGCCCTTGGAAAAATCTGAGCAATGTTCAAATTGG
GAGTTAAGGCCCTTAAGAAATACTCAGATTCACTATGCTGCTTTGGATGCTTTTGTTTTG
TTAGAGATATACAAATACCTTCAAAATCTTTGTGTAGAACAACATATTAATTTTGAGGAA
ATTTGTAATGATGTAATGTTGGATAGAAAACTGAAATGTCTAAAAAAGAATAAAGTAGTT
GATTGTCTGCAGACAACAAAAAATATAAAGGTGAGAACTCCTATGGACGTTAAAATTCTT
CTTGAACATGACAATGCACATTTACGATATTATCTAAGATACTGTGGTATTGACACTACT
ATTACAACTTCCCATATGTTATGGCACGATACTATTAAATTAGCCACATCTGAAAATCGT
TTAATATTGACATCTAAATTGAAGTTTTCACCATCTAGCAGATTTTCACAAAACTTTATC
TTAGATATAGGTAAAGGAAGCATCAAGGATCAATTATTAAAAATTCTTAAACATTTTAAT
GTGGGCCTTCAAAAGAATTATATTTTGACAAGATGTATAGAATGCAATTCTACAGATGTA
AAATATTACTCTATTAATGATCTCAAAGATATATGTAGAAAATATAATGGTGGTAGCCAC
AAGTCTTCCGATCAGATCAGAAGGAGTGCTAGTGACAATGAAGATGATAATGATTATTCT
GAAAACTTTCTCAGTGATTCAGAAGGGGAAGACATACATTTATACAAACCATTTCCAATA
CAGGACAAATGGTATACATCTAGCAGTGGAGCTAAAATTAATATGAATCAGATTGAAAAG
TTATGTGCTTCCAATAAAACTTCACATATTTGTGAAAATTGTGGAAAACTATATTGCGAT
GAAGAGCCGTTGCTTAAATCAATACACGAAGTAATCATGTCTATAACAAATTTTAATTAG
Protein sequence:
MDLNKLVHQNQTIKIIPSLEDSLRGLGLNSDLDEETEIWFNQLKIKWKTWKKSPTIERHF
DSFFQFCQDPFRVALVCIVKCDEPKDRKPKSLSYCILEIIFKWSQTNGRLPEETLKLPAY
NIATQQRNQHFLYLAVKTYQLYTIKETVLPLVKDMIRNDNCKQASQIVIAMELFDEIPVE
DLLFPLVLQDTPNLIDEYLSESPNQIQPFLLFLDRLLDKNFSIRDYAQKFIEENKIYNVK
YDKIHYKPLGKLVARLCNKFNVPIESCKNLSKNRTTGGLRYLIHQRYVEHNLSPSVWDDL
VKDSLKQSTDCAKEFVDMLAMYDINESLKWSSYFEISNDCLPHALQNLTIKDNPIEEENW
DSTDNAAQNYYRLPISEENILIIDTAEKFDELISKLSNCPIISFDCEWKPSFGAAKSRMA
LIQIGTFDQVYLIDTLILNNKQYMGSWCRFNKYVLDNAEIIKLGFGVEQDLNEMKSLIIG
LNNIKVKGEGLLDLGLLWKNLVKCGLSLPSNSDNGGNSLSSLVQTCFGLPLEKSEQCSNW
ELRPLRNTQIHYAALDAFVLLEIYKYLQNLCVEQHINFEEICNDVMLDRKLKCLKKNKVV
DCLQTTKNIKVRTPMDVKILLEHDNAHLRYYLRYCGIDTTITTSHMLWHDTIKLATSENR
LILTSKLKFSPSSRFSQNFILDIGKGSIKDQLLKILKHFNVGLQKNYILTRCIECNSTDV
KYYSINDLKDICRKYNGGSHKSSDQIRRSASDNEDDNDYSENFLSDSEGEDIHLYKPFPI
QDKWYTSSSGAKINMNQIEKLCASNKTSHICENCGKLYCDEEPLLKSIHEVIMSITNFN