| New model in OGS2.0 | DPOGS210974 |
|---|---|
| Genomic Position | scaffold1265:- 27320-29023 |
| See gene structure | |
| CDS Length | 1704 |
| Paired RNAseq reads | 343 |
| Single RNAseq reads | 1056 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006403 (0.0) |
| Best Drosophila hit | Sur-8, isoform B (0.0) |
| Best Human hit | leucine-rich repeat protein SHOC-2 (7e-175) |
| Best NR hit (blastp) | PREDICTED: similar to shoc2 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to shoc2 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0017016 Ras GTPase binding |
| InterPro families | IPR001611 Leucine-rich repeat IPR003591 Leucine-rich repeat, typical subtype |
| Orthology group | MCL12127 |
Nucleotide sequence:
ATGAATCTTGATAATTCCTCTAGAGAAAATTCGGAAGCTTTAGATACAATTGGTACTGTG
AGCCCGAGAGAAAAATACCACGGTATGAGGGAGAAGAAATTGTCAGCTGCATCCTTGACC
AATGCAGAAGGAGCGCGGCCCAAAGTAGTGACGGTAAAACATCCAGAATCCAACAAGCCA
AAACCAACCGCCCGAAAAAATAAACCCATCCAAGCCGACTTAGACGTCGTTAGAGAATTC
ATAAGATGCAGAGATGAAGGTGTTAAAAGACTTGATCTCAGTAAATCGTCTATTACTTCT
TTACCTCCGAATGTGAGAGATTTGACACATCTTGTTGAGTTTTATTTGTATGGAAATAAA
CTAGTAGCTCTACCTGCGGAGTTTGGTTGTTTAACCAATCTACAGACCCTAGCACTTAAT
GAAAATTCGCTGACAAGTTTGCCTGACTCACTGGCTCATTTAAGATCATTAAAAGTTTTA
GATCTCCGACACAATAAATTAAGTGATATACCTGAAGTTGTCTACAAATTAACATCACTG
ACAACATTATTTTTACGATTCAATCGAATAAGAGTAGTTGGTGATGGCATTGCTAATCTT
ACAAATCTAACAATGTTGAGCTTAAGAGAAAATAAAATAAAGGAACTCTCTTCTGGTATT
GGAAAACTTGTAAATTTGGTGACTTTTGATGTTTCCCATAATCATTTAGAGCATTTACCA
CAAGAGATTGGTAATTGTGTTAATTTATCTACATTAGATTTGCAGCACAATGAGTTGTTA
GACATTCCAGATACAATTGGCAACTTACAGGCACTAAATCGTATTGGGTTGAGATATAAT
AGACTCAATGCTATACCAGCTTCTTTAAGTAACTGTAAACATATGGATGAATTTAATGTA
GAGGGGAACTCAATATCTCAACTTCCAGATGGACTACTGTGTAGTCTGACTGAGCTTACA
AGTCTTACATTGTCCCGAAATTCATTTATGAGTTATCCTAGCGGTGGGCCAGCACAATTC
ACTAGTGTTTCATCCATAAATCTAGAACACAATCAAATAGATAAAATACCCTATGGAATA
TTTTCGAGGGCAAAAAATTTAACCAAATTGATAATGAAAGAAAATTTGTTGACATCCCTT
CCTTTGGACATTGGAACATGGACAAACATGGTGGAACTTAATTTGGGTACAAACCAACTG
GTAAAACTACCTGATGACATACAAAGCTTAATAAACTTAGAAGTGTTGATTCTATCAAAC
AATCTTCTTAAGAGGATCCCACCAAGCATTGGCAACTTGAGAAAGCTAAGGGTATTGGAT
TTGGAAGAAAACAAGATTGAAATCCTTCCCAATGAAATAGGATTTCTACAGGAATTGAAA
AAACTGATTGTTCAATCTAATCAATTGACTTCATTGCCGCGCTCAATTGGACATCTGATA
AATCTCACATATCTTAGTGTTGGTGAAAATAATTTGCAATATTTACCTGAGGAGATAGGC
ACCCTTGAGAATTTAGAATCACTGTACCTCAATGATAATCCTAATTTATGCAATCTGCCA
TTTGAGCTAGCTCTATGTGTTAGCTTGCAAATTATGAGTATTGAGAATTGTCCTTTGACC
TCTCTACCACCAGATGTAGTATCTTCAGGGCCATCTTTGGTAATCCAATATCTCAAATCA
CAAGGGCCTTATAGATCCATGTGA
Protein sequence:
MNLDNSSRENSEALDTIGTVSPREKYHGMREKKLSAASLTNAEGARPKVVTVKHPESNKP
KPTARKNKPIQADLDVVREFIRCRDEGVKRLDLSKSSITSLPPNVRDLTHLVEFYLYGNK
LVALPAEFGCLTNLQTLALNENSLTSLPDSLAHLRSLKVLDLRHNKLSDIPEVVYKLTSL
TTLFLRFNRIRVVGDGIANLTNLTMLSLRENKIKELSSGIGKLVNLVTFDVSHNHLEHLP
QEIGNCVNLSTLDLQHNELLDIPDTIGNLQALNRIGLRYNRLNAIPASLSNCKHMDEFNV
EGNSISQLPDGLLCSLTELTSLTLSRNSFMSYPSGGPAQFTSVSSINLEHNQIDKIPYGI
FSRAKNLTKLIMKENLLTSLPLDIGTWTNMVELNLGTNQLVKLPDDIQSLINLEVLILSN
NLLKRIPPSIGNLRKLRVLDLEENKIEILPNEIGFLQELKKLIVQSNQLTSLPRSIGHLI
NLTYLSVGENNLQYLPEEIGTLENLESLYLNDNPNLCNLPFELALCVSLQIMSIENCPLT
SLPPDVVSSGPSLVIQYLKSQGPYRSM