| New model in OGS2.0 | DPOGS210993 |
|---|---|
| Genomic Position | scaffold1265:+ 30089-34947 |
| See gene structure | |
| CDS Length | 1278 |
| Paired RNAseq reads | 343 |
| Single RNAseq reads | 1266 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006476 (4e-58) |
| Best Drosophila hit | cleavage stimulation factor 64 kilodalton subunit (3e-86) |
| Best Human hit | cleavage stimulation factor subunit 2 (3e-80) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC004378 [Tribolium castaneum] (7e-117) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC004378 [Tribolium castaneum] (4e-112) |
| GeneOntology terms | GO:0006379 mRNA cleavage GO:0005848 mRNA cleavage stimulating factor complex GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL11260 |
Nucleotide sequence:
ATGGATAAATCCATGAGATCTGTTTTTGTGGGAAATATACCTTACGAAGCAACGGAAGAA
AAATTAAAAGATATATTTAGTGAAGTTGGCCCTGTGTTATCCTTTAAACTAGTTTTCGAT
AGAGAAACTGGTAAACCCAAAGGTTATGGTTTTTGTGAATATAAAGATCAGGAAACTGCT
CTCAGTGCTATGAGAAATCTAAACGGATATGAAATTGGTGGTAGATCACTTAGGGTTGAC
AATGCTTGTACTGAAAAATCGAGAATGGAAATGCAGGCATTAATGCAAGGGCCTCAGGTT
GAAAACCCATATGGAGATCCTGTAGATCCAGAGAAAGCTCCCGAGGCTATTAGTAAAGCT
GTTGCTACTTTACCACCTGAACAAATGTTTGAACTTATGAAGCAAATGAAATTATGTATT
CAGAACAATCCAACAGAAGCTAGGAACATGTTGTTGCAAAATCCTCAACTTGCGTATGCT
TTGTTACAAGCACAAGTTATAATGAGGATTGTGGACCCCATTACAGCCGTTAGTATGTTG
CATCCCAGTAATGCTGTTCCTCCAGTGCTACAACCTGGTGATAAGCCGCCCGTCTCCAAT
AACAATCCAACAGAAGCTAGGAACATGTTGCTGCAAAATCCTCAACTTGCGTATGCTTTG
TTACAAGCACAAGTGATAATGAGGATTGTGGACCCCATCACAGCCGTTAGTATGTTGCAT
CCCAGTAATGCCGTTCCTCCAGTGCTACAACCTGGTGATAAGCCACCTGTCTCCAATGTT
TATATGCCGAATCCACCACCTCCTGTTCAACAACCACCTCTATTGGCTAATCCACCTCCG
ACTCAGAATCAATATGTCCCTCGTCCACCACAACAAATGGATACTGATCTACGTAACTCT
CGACCGCCTCTATTAGACCAAGACATGCGCAGTCTGCATCACACTGCGCCGCCGCCCGTA
CATCCGCCCGTTCAGGATAATTCGTTTCCCCGAGATCCTCGTCTCGCTAGTATGCCGTTC
AACTCAGACCCTCGCGTGCGATCGGACCCACGCACGCAAACTAAAATGCCACCCCAAATG
CCCCCTGGCATGCCGAGTATGGCACAAGCGAGGACCATACAGGGTATTCCTTCAGGTGCA
TCTGACCAAGAGAAGGCTGCCTTAATTATGCAAGTGTTACAGTTATCTGATGAACAAATA
GCACTGTTGCCTCCAGAACAACGTGCTAGTATTCTTATGCTTAAAGAACAAATAGCAAAA
AGCACACAACAACGTTAA
Protein sequence:
MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA
LSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVDPEKAPEAISKA
VATLPPEQMFELMKQMKLCIQNNPTEARNMLLQNPQLAYALLQAQVIMRIVDPITAVSML
HPSNAVPPVLQPGDKPPVSNNNPTEARNMLLQNPQLAYALLQAQVIMRIVDPITAVSMLH
PSNAVPPVLQPGDKPPVSNVYMPNPPPPVQQPPLLANPPPTQNQYVPRPPQQMDTDLRNS
RPPLLDQDMRSLHHTAPPPVHPPVQDNSFPRDPRLASMPFNSDPRVRSDPRTQTKMPPQM
PPGMPSMAQARTIQGIPSGASDQEKAALIMQVLQLSDEQIALLPPEQRASILMLKEQIAK
STQQR