New model in OGS2.0 | DPOGS204333  |
---|---|
Genomic Position | scaffold794:+ 58512-63920 |
See gene structure | |
CDS Length | 1824 |
Paired RNAseq reads   | 4131 |
Single RNAseq reads   | 11450 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007230 (0.0) |
Best Drosophila hit   | Ef1alpha-like factor (0.0) |
Best Human hit | eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform 2 (0.0) |
Best NR hit (blastp)   | Ef1alpha-like factor isoform 1 [Bombyx mori] (0.0) |
Best NR hit (blastx)   | Ef1alpha-like factor isoform 1 [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0003747 translation release factor activity GO:0006415 translational termination GO:0005829 cytosol GO:0008079 translation termination factor activity GO:0005525 GTP binding GO:0003924 GTPase activity |
InterPro families    | IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel IPR000795 Protein synthesis factor, GTP-binding IPR004160 Translation elongation factor EFTu/EF1A, C-terminal IPR004161 Translation elongation factor EFTu/EF1A, domain 2 IPR009818 Ataxin-2, C-terminal |
Orthology group | MCL10897 |
Nucleotide sequence:
ATGTCCAATAACGGTGCTCCGGACTCTTGGGAAGCTCAAGCCGATGTTATAGGTGAACAA
GGTGCAAAAGATTCTAATGATGTGTCTACAAAATTTTCCACGTTGAATGTTAATGCTGTG
GAATTCGTGCCTTCTTTCTGTATACCTTCCCAAGGTGACGACAGTACTGATTCACCGACT
TCATCACAAAAATCTGAGAGTGAATCTACTAATTCCGCTGAGAGTCCTGTCTTGAACGGT
TGTGGAGATGGTGTCGAGAGTGGTGATGGAAGAGCAGCATCTGCATCACCGAGAGTTGAG
GAGCCCCCTCCTGTCCCTCCAGCTGCCTCCACTGAGACACCTGTTCCTGTTCCATCTGAC
GTCTCCCCCACAGCTGATAGCTGGGAAGCTGAAGCCGACGATGCATTACTCACACCAGAA
GACACCAATGAAGTCGAGGAGGAAGAACTCGAACAACAGGTGCCATCCACTGAAGATGGT
GAAATCTCAAAGAAAATTCCGAAGAAAAAACCAGTCAGGGTTGAAGATACTCGCAGCAAA
AAGGAACATGTAAATGTTGTTTTCATAGGGCATGTAGATGCTGGTAAATCTACAATTGGT
GGTCAAATAATGTCCTTGACTGGCATGGTAGATAAAAGAACACTAGACAAATATGAAAGA
GAAGCAAGGGAAAAGTCCAGGGAATCTTGGTACCTCTCTTGGGCTTTAGATACGAACCAA
GAAGAACGTGACAAAGGTAAAACTGTGGAAGTGGGCAGGGCATACTTTGAGACTGAAAAG
AAGCATTTTACAATCCTCGACGCCCCCGGGCATAAGAGTTTCGTTCCAAACATGATAGGG
GGCGCCGCGCAGGCCGACCTCGCTGTACTTGTGATATCTGCTAGGAAAGGTGAATTTGAA
ACAGGATTTGACAGAGGGGGACAAACAAGAGAGCATGCTATGTTAGCAAAGACTGCTGGT
GTTAAGCATTTAGTTGCACTTGTTAATAAAATGGATGATCCCACTGTGAACTGGGATGAG
AAAAGATACAATGAATGTAGAGATAAAATTCTTCCCTATCTAAAAAAACTGGGATTCAAT
CCAGCAAAGGACTTATCCTTCTTACCAGTTTCGGGACAAACTGGTCAAGGTTTACTTGAG
AGAGTATCCGAAGAAATATGTACGTGGTACCGTGGTCCATCTTTTATACAATTAATTGAT
GAGTTGCCATCACTGAACCGCAAGATGGATGGTCCCTTCATAATGCCGGTAGTCGACAAG
TACAAGGACATGGGAACGGTTCTCATGGGTAAAGTTGAAGCGGGAACTACAAGAAAGGGC
AGCACTCTTTTCCTTATGCCTAATAGGGCACAAGTAACAGTCGATCAGTTATGGTCTGAC
GACATTGAAGTAACCTCTATTGGTCCCGGTGAAAATGTTAAAGTGAAGCTCAAAGGCATC
GAAGAAGAAGATGTCTCTCCCGGCTTTGTTCTTTGTGATACCGCAGAACCAATAACCACT
GGAAGAGTATTTGATGCTCAAGTGGTGATATTGGAACATAAATCAATCATTTGCGCTGGA
TATTCCGCTGTTATGCACATACATTGTGCGGCTGAAGAAGTTACTGTTAAGGCTCTAATC
TGTTTAGTTGACAAGAAGACTGGTGAGAAGTCAAAGACGCGGCCGCGGTTCGTTAAACAG
GATCAAGTGGCCATTATGAGGATAGAATGTGCGGGGATCATATGTCTAGAGCCGTTCAAG
AAGTTCGCACAGATGGGAAGGTTCACATTAAGAGATGAAAATAAAACAATTGCAATCGGC
AAAGTCCTAAAAGTGGTTGAATAA
Protein sequence:
MSNNGAPDSWEAQADVIGEQGAKDSNDVSTKFSTLNVNAVEFVPSFCIPSQGDDSTDSPT
SSQKSESESTNSAESPVLNGCGDGVESGDGRAASASPRVEEPPPVPPAASTETPVPVPSD
VSPTADSWEAEADDALLTPEDTNEVEEEELEQQVPSTEDGEISKKIPKKKPVRVEDTRSK
KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLDKYEREAREKSRESWYLSWALDTNQ
EERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFE
TGFDRGGQTREHAMLAKTAGVKHLVALVNKMDDPTVNWDEKRYNECRDKILPYLKKLGFN
PAKDLSFLPVSGQTGQGLLERVSEEICTWYRGPSFIQLIDELPSLNRKMDGPFIMPVVDK
YKDMGTVLMGKVEAGTTRKGSTLFLMPNRAQVTVDQLWSDDIEVTSIGPGENVKVKLKGI
EEEDVSPGFVLCDTAEPITTGRVFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALI
CLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGIICLEPFKKFAQMGRFTLRDENKTIAIG
KVLKVVE