| New model in OGS2.0 | DPOGS206371 |
|---|---|
| Genomic Position | scaffold597:- 65815-70235 |
| See gene structure | |
| CDS Length | 2397 |
| Paired RNAseq reads | 397 |
| Single RNAseq reads | 1201 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005770 (0.0) |
| Best Drosophila hit | Scm-related gene containing four mbt domains, isoform A (1e-23) |
| Best Human hit | scm-like with four MBT domains protein 1 (2e-105) |
| Best NR hit (blastp) | hypothetical protein BRAFLDRAFT_226942 [Branchiostoma floridae] (2e-127) |
| Best NR hit (blastx) | hypothetical protein BRAFLDRAFT_226942 [Branchiostoma floridae] (5e-128) |
| GeneOntology terms | GO:0005634 nucleus GO:0045449 regulation of transcription |
| InterPro families | IPR010993 Sterile alpha motif homology IPR004092 Mbt repeat IPR021987 Protein of unknown function DUF3588 IPR013761 Sterile alpha motif-type |
| Orthology group | MCL17763 |
Nucleotide sequence:
ATGGAATTTGAATGGAATAATTATTTAGAAGATACAAAAACTATTGCTGTTCCCGAAGAA
TTATTTTATCACGTTGAAGCCAGCCTCAACAATGGTATCAAGCAGGGGATGTTACTCGAG
GTGTGTCACAAGAACAATCCTGATGTATACTGGTTGGCTGAGATCACAATGGTCTGCGGC
CACTTGCTTAGGATAAAATTCATTGGTGCCCAGACCGACTTTTGGTGTGATATATCCAGT
ACTAAAGTCCACCCTCTCGGCTGGTGTGGAAAATATGATGAATTGGTTGAGCCTCCCGAT
GAGATAAACGAAAGATGCGGAGAAACTATCATAGATATAATGAAAAAAGCCCTCCTTGTT
GGACAATCGGTTTCACTCGAGGCATTGAATAACAAAGGGATGTCTCCAATCGATCGAATC
AAAGTTGGGATGAAAGTGGAAATACAGAATATAATTGATCCATACAGATACTGGATTGCA
ACTGTGTGTGAAAACATTGGAGGTCGGCTCTTGTTGAGGTATGATGGAGCTGATGAAGAT
TTACCACAGTTTTGGATGTTCTTCTGCAACACCAGACTCAGCAGCTTTGGATTTGTCACC
AACAAGGGTTCTCCGTGGCAGTTCAAGTACCCAGGCAAAGTTAATAAATTCTCGTGTAAG
AACAAACTCAGCACGCAACTGAGACAAAGCGCCGAGGAATCTATCAAAGAACCAACTCCA
GCTGATCTGTTTCAGCCAAATCCGATCTTAGAGGCGCACAGTTTTGCTACAGGCATGAAA
GTAGAAGCACTAAGTCCGAACGACATGAAGACTTTCCGCCCTGCCACGGTAACCAAAATC
TTCAATAATCTCCATTTCTTGGTCGTCATAGACGATCACCTAGAAGATTACGAGGACACC
AAAATGGCCTGGCTTTGTGATAACATGCACCCCTACATTTACCCCATCGGCTGGGCACAA
TCACACAAACTTGATATTAAGCCACCTAAAGTGTGGAAGGAAGGTGTATTTGAATGGGAG
GATTACCTTGCGATGACCGCCTCCGTCCCCGCGCCGGAATACTGTTTCGGAAACAAGGAA
CAGCTTAAAGGAATCGAAGCCAATATGAAGTTGGAAGCGGTGAATCCTCTGAACCACGAG
GAAATCCACGTAGCTTCGGTCGAATTAATAGTGGAACACATGTTGTACGTCGAACTTTTG
CCGATCGGCGAAAAGTTCTGGTACTCCCAAGATAGCGATCTCTTGTTCCCCGTAGGATGG
TGTGACAGCAACAACTATGAGCTCCATATACCAGACACCAACCCAAAAGAAATACTCAAG
CCCGTCGAGGAGCCCAAAACGATCAAAGATGACATCAAATCATCGGAAGAGTGGTGCGAT
AGAATATTTTTCAATTATAAATGTTATGCCGGTCCGTCGATAAGTCGTAACAAATTATCA
CAGCTGCCCAAAGCTGTGGGCCCTGGACCCTTGCTGCTTGTACTAAAAGAAGTACTCAAC
AAAATCATCTCGGCCTCATACAAACCGGCGAAATTGCTCAAAGATTGGGAAACTGAAGGT
CCGCCAGACGAAGGCATGAAACTAGAAATGCTAAGAGCCAAATTAAAAGCGAGCACGTAC
CACGCGTTCGTCCCCATAACGACCGAGGCGTCCAAGGTGGGCTCGTTCTGTCGGTCCATA
TGTGTCAAGCTACAGGCCTGTCCCAGTCTGTTCGGACCTGACGAGTACCCTCTGCAATGT
CCGCACGCCTGTCAGACGGTCGAGAAGTCAACCTTCCATAATGGAACAGAACGACGAGGC
AGGCCGAAAGGTAGCGTGAATGGAAGGAAAAAAAAGAAAAAAACACAGCAGGAGAAGAGG
GAAAAGGAGCAACCGCCAGTACAGGAGATTGAGCACAGAGATATAGAGTCGGTTGAAAGC
GAACACAGCGCCGGTAAGAAAAGAAATACACAGGACAGCGACACAGAGAACGAGACCAAC
GAGAGTAGCTGCAATTCGAGAGACTCCAAAAACATATCGGACGTCAGCGACTCGGAGGAA
CCGGAACTGAAGAAACTCAAGTTCAACACCAACGATCCGCTGCCGTCAGATAACAAGATG
TTCGAGAAGAACACAACCACCGCCTGGGCCAGGGGGAAAATGAAGCTGGCGAGGAACCCC
CTGGACTGGACGGTCGACGACGTCTACAACTATCTGAGCAACACCGACGACTGCAAACTG
ATAGCGGACAAGATGAAGCAGGAAGAAATAGACGGCCAGGCCTTCATCATGCTGGACCTA
CCCATCATAACGCACTTCCTGCACATGAAGAAGGAGTTCGCTATGCAGCTCTGCAAACAC
ATCACCATGATACGGTGGTACTACATCGACAACTTCGACGACAACGCCGACATGTAA
Protein sequence:
MEFEWNNYLEDTKTIAVPEELFYHVEASLNNGIKQGMLLEVCHKNNPDVYWLAEITMVCG
HLLRIKFIGAQTDFWCDISSTKVHPLGWCGKYDELVEPPDEINERCGETIIDIMKKALLV
GQSVSLEALNNKGMSPIDRIKVGMKVEIQNIIDPYRYWIATVCENIGGRLLLRYDGADED
LPQFWMFFCNTRLSSFGFVTNKGSPWQFKYPGKVNKFSCKNKLSTQLRQSAEESIKEPTP
ADLFQPNPILEAHSFATGMKVEALSPNDMKTFRPATVTKIFNNLHFLVVIDDHLEDYEDT
KMAWLCDNMHPYIYPIGWAQSHKLDIKPPKVWKEGVFEWEDYLAMTASVPAPEYCFGNKE
QLKGIEANMKLEAVNPLNHEEIHVASVELIVEHMLYVELLPIGEKFWYSQDSDLLFPVGW
CDSNNYELHIPDTNPKEILKPVEEPKTIKDDIKSSEEWCDRIFFNYKCYAGPSISRNKLS
QLPKAVGPGPLLLVLKEVLNKIISASYKPAKLLKDWETEGPPDEGMKLEMLRAKLKASTY
HAFVPITTEASKVGSFCRSICVKLQACPSLFGPDEYPLQCPHACQTVEKSTFHNGTERRG
RPKGSVNGRKKKKKTQQEKREKEQPPVQEIEHRDIESVESEHSAGKKRNTQDSDTENETN
ESSCNSRDSKNISDVSDSEEPELKKLKFNTNDPLPSDNKMFEKNTTTAWARGKMKLARNP
LDWTVDDVYNYLSNTDDCKLIADKMKQEEIDGQAFIMLDLPIITHFLHMKKEFAMQLCKH
ITMIRWYYIDNFDDNADM