New model in OGS2.0 | DPOGS210900  |
---|---|
Genomic Position | scaffold260:+ 55423-71123 |
See gene structure | |
CDS Length | 606 |
Paired RNAseq reads   | 31 |
Single RNAseq reads   | 223 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003079 (7e-41) |
Best Drosophila hit   | Sox21b (5e-54) |
Best Human hit | transcription factor SOX-21 (4e-40) |
Best NR hit (blastp)   | Sox21b [Tribolium castaneum] (4e-56) |
Best NR hit (blastx)   | Sox21b [Tribolium castaneum] (2e-55) |
GeneOntology terms    | GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus GO:0045449 regulation of transcription GO:0008301 DNA bending activity |
InterPro families    | IPR000910 High mobility group, HMG1/HMG2 IPR009071 High mobility group, superfamily |
Orthology group | MCL16200 |
Nucleotide sequence:
ATGTACACCCTTTCACAACTCGACTACCAAACGTCGATGAACTCTGCCGCTGGTGCTATG
TGCGATCGAGCTGGTTATGGTAGCACCATGAGCCACTTCCCCATGGGCCCAATGTCGGCC
ATGGGAGCCATCGGCACAATGGGAGCGATCTCGGCCATGAACGGCCAATCACACCAGAAG
AAATCCCAGGAGGAACACATCAAGCGACCCATGAACGCGTTCATGGTGTGGTCCAGATTA
CAAAGGAGGAAAATTGCCCAGGACAATCCAAAAATGCATAACTCGGAGATCTCAAAGAGA
TTAGGCGCTGAATGGAAGTTGCTCTCAGAAGACGAGAAGAGACCCTTCATTGATGAGGCG
AAGCGTTTGAGAGCCATGCACATGAAGGAACACCCAGACTATAAGTACAGACCGCGGAGG
AAGCCCAAGACTTTGAGGAAGGAAGGCTATCCCTACTCCATCCCCTATCCCAGTGTACCG
ATGGACGCCTTGAGAGCCGCATATTATGACGGTAGTTTGTTGAACGGAAGTGACCAATGG
CGTGCGCTGGCGGCTCCCCCTCCCCCGGGCCGAGCTGCTTCCGGTCGCGTGACGTCATTT
ACATGA
Protein sequence:
MYTLSQLDYQTSMNSAAGAMCDRAGYGSTMSHFPMGPMSAMGAIGTMGAISAMNGQSHQK
KSQEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLSEDEKRPFIDEA
KRLRAMHMKEHPDYKYRPRRKPKTLRKEGYPYSIPYPSVPMDALRAAYYDGSLLNGSDQW
RALAAPPPPGRAASGRVTSFT