| New model in OGS2.0 | DPOGS202468 |
|---|---|
| Genomic Position | scaffold1141:+ 27788-28486 |
| See gene structure | |
| CDS Length | 405 |
| Paired RNAseq reads | 47 |
| Single RNAseq reads | 193 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010883 (9e-41) |
| Best Drosophila hit | histone H2A (2e-35) |
| Best Human hit | histone H2A.x (2e-36) |
| Best NR hit (blastp) | histone H2AX-like protein [Bombyx mori] (1e-42) |
| Best NR hit (blastx) | histone H2AX-like protein [Bombyx mori] (1e-41) |
| GeneOntology terms | GO:0000786 nucleosome GO:0007049 cell cycle GO:0005654 nucleoplasm GO:0007569 cell aging GO:0005515 protein binding GO:0019899 enzyme binding GO:0010212 response to ionizing radiation GO:0000790 nuclear chromatin GO:0007126 meiosis GO:0005657 replication fork GO:0007283 spermatogenesis GO:0006974 response to DNA damage stimulus GO:0003677 DNA binding GO:0045739 positive regulation of DNA repair GO:0006310 DNA recombination GO:0005634 nucleus GO:0001741 XY body GO:0003684 damaged DNA binding GO:0042393 histone binding GO:0005694 chromosome GO:0006302 double-strand break repair GO:0000724 double-strand break repair via homologous recombination GO:0000781 chromosome, telomeric region GO:0006334 nucleosome assembly GO:0000077 DNA damage checkpoint GO:0001673 male germ cell nucleus |
| InterPro families | IPR007125 Histone core IPR009072 Histone-fold IPR002119 Histone H2A |
| Orthology group | MCL40576 |
Nucleotide sequence:
ATGTCTGGGAACAAATCTACTTCAACTAAATCCAAAACCAAGAGCTCCCGCTCTGGTCTT
ACCTTTCCTGTTGGACGAGTTCACAGAATTTTAAGAAAAGGGCGATATGCTTCTAGAATT
GGTTGTGGAGCAGCAGTCTATATTTCAGCAGTGCTTGAATATCTTTCTGCTGAAATTTTA
GAATTATCAGCTAAAGCTGCTCAAGATAATAATAGGGCCAGAATATTACCAAGGCATATA
ATGTTGGCTATAGGCAACGATGAAGAGCTAGATAGAATGCTGAGTGGTGTGACTATATCA
CATGGCGGAGTGATGCCGAGGATTGAACCAGAGTTACTACCCAAGAAAACTGCCATTAAA
AGCCACAGTACAGATACATCAATGATGGCGTCACAGGAGTACTGA
Protein sequence:
MSGNKSTSTKSKTKSSRSGLTFPVGRVHRILRKGRYASRIGCGAAVYISAVLEYLSAEIL
ELSAKAAQDNNRARILPRHIMLAIGNDEELDRMLSGVTISHGGVMPRIEPELLPKKTAIK
SHSTDTSMMASQEY