| New model in OGS2.0 | DPOGS202470 |
|---|---|
| Genomic Position | scaffold1141:+ 31511-33680 |
| See gene structure | |
| CDS Length | 978 |
| Paired RNAseq reads | 370 |
| Single RNAseq reads | 853 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | CG6745 (6e-35) |
| Best Human hit | pseudouridylate synthase 7 homolog (6e-28) |
| Best NR hit (blastp) | tRNA pseudouridine synthase D [Culex quinquefasciatus] (1e-63) |
| Best NR hit (blastx) | tRNA pseudouridine synthase D [Culex quinquefasciatus] (1e-57) |
| GeneOntology terms | GO:0001522 pseudouridine synthesis GO:0009982 pseudouridine synthase activity GO:0003723 RNA binding |
| InterPro families | IPR001656 Pseudouridine synthase, TruD IPR020103 Pseudouridine synthase, catalytic domain |
| Orthology group | MCL12703 |
Nucleotide sequence:
ATGCGAGGTGGGCATAGAGGTGGTCGCGGTCAAAACCGTGGGAATAGAGGATTCAGAGGT
TCGAGAGGTAATTATTCGCGTGGTGACAGACAAAATAATTTGGGATATAATAATTACAAT
AAGCCATGGCATTCGCAAACCAAACGTGATATTCCAACTAAACGACTCTCTGAAGAGGAT
ATTGGAGTCACCGAGTACCTCAGTGAGCATCAAGGATTTAACGGAATCATAAAGTCGAGA
TTTTCAGATTTTCAAGTGTCAGAAATAAATGAGGCGGGTGAAGTTGCTCAGCTGACAGAT
GAGTCTCCACCCGAAGCACCATTAGAGGAGCTGGTTGAAGACGACGAAGAACTGCTTCTC
AATAAATACAATTTGGAAATTCTACCTATGGAAACTTGGGACAAAATAAACAAGTTGGCT
GTCTCTACTGAACAAACTTCAGAAAAAATTGAGGTTGATGTATCAGGAATGTCCAAAGAG
GACAGGACAAAAATCCACGAGGCTGTCAAAAAAGCGTTCGGTGAAAGCATCATTGGTAGC
ACAGTCACGGTAGAAGACAAGAAGTTTGTTACATTCACCAAGTATCGCAAGGGAGTCAGA
TTTGATAATCGTGTGAAGTGGGTGTGGGGTGGTGAGTATGTACATTTTGTGGTGTACAAG
GAGAACTGCGATACCATGGAAGCTGCATCAGTACTGGCGCAAAGGTTACATATAAGCCCT
TCAATGCTGGGTTATGCTGGAACTAAAGATAGGAGAGCTAAGACCAGCCAGTGGTTCAGC
ATCCGTAGGTTCGAACCTCGTCGTATAGCGTCAGCGGCCCAGCAGAATCGGATGCCTAGA
GTGCGGGTTGGCAATTTCTGCTTCAAGGATTACCATCTCAAGCTGGGCATGCTGAAAGGA
AACAAGTATGTTGATATAGCTATATTAGTATCTCAGCTAACATTACAAATGATTTTATAC
GATTGTAGATGGCGCTGA
Protein sequence:
MRGGHRGGRGQNRGNRGFRGSRGNYSRGDRQNNLGYNNYNKPWHSQTKRDIPTKRLSEED
IGVTEYLSEHQGFNGIIKSRFSDFQVSEINEAGEVAQLTDESPPEAPLEELVEDDEELLL
NKYNLEILPMETWDKINKLAVSTEQTSEKIEVDVSGMSKEDRTKIHEAVKKAFGESIIGS
TVTVEDKKFVTFTKYRKGVRFDNRVKWVWGGEYVHFVVYKENCDTMEAASVLAQRLHISP
SMLGYAGTKDRRAKTSQWFSIRRFEPRRIASAAQQNRMPRVRVGNFCFKDYHLKLGMLKG
NKYVDIAILVSQLTLQMILYDCRWR