New model in OGS2.0 | DPOGS213088  |
---|---|
Genomic Position | scaffold320:+ 68555-70493 |
See gene structure | |
CDS Length | 900 |
Paired RNAseq reads   | 292 |
Single RNAseq reads   | 821 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007698 (4e-13) |
Best Drosophila hit   | Rrp4 (3e-99) |
Best Human hit | exosome complex exonuclease RRP4 (1e-85) |
Best NR hit (blastp)   | exosome complex exonuclease RRP4 [Culex quinquefasciatus] (3e-110) |
Best NR hit (blastx)   | exosome complex exonuclease RRP4 [Culex quinquefasciatus] (1e-105) |
GeneOntology terms    | GO:0000176 nuclear exosome (RNase complex) GO:0006397 mRNA processing GO:0000175 3'-5'-exoribonuclease activity GO:0000177 cytoplasmic exosome (RNase complex) GO:0003723 RNA binding GO:0005652 nuclear lamina GO:0005737 cytoplasm |
InterPro families   | IPR003029 Ribosomal protein S1, RNA-binding domain |
Orthology group | MCL15467 |
Nucleotide sequence:
ATGACTGGCCATGTGTCTATAAGATTAGCATCGGAACGAGTAAACCATTGTGTTCCTTGT
CCAAATGAATTACCACGGTTTTATACACCGGGAGAGGTTATAACTGGCATGCAAGACTTT
ATGCGTGGCCATGGAACATATGCAGAAGATGATTCCCTCAAGTCATCAGTTGCTGGTGTA
ATGCAAAAAGTAAACAAATTAATATGTGTTCGACCATTAAAAAGTAGATATGTTGGAGAA
ATAGGTGATGTTATTGTAGGACGTGTTCTTGAAGTTCAACAAAAGAGATGGAAAGTAGAG
ACCAACTCTCGTTTAGATTCCATTTTACAATTGTCATCTGTAAACTTACCAGGAGGAGAA
TTGCGTAGAAGATCAGCTGAAGATGAACAAATGATGAGGAAACATTTACAAGAAGGAGAC
CTCATAAGTGCTGAAGTTCAAAGTGTTTTTTCTGATGGTTCTCTGTCCTTACACACAAGA
AGTTTGAAATATGGCAAGTTATCACAAGGTGTCCTAGTTAAAGTATTTCCGTCATTGATT
AAGCGAAGAAAGAATCACTTCCATAACTTGCCCTGCGGTGTTTCAATAATAATAGGAAAC
AACGGTTATATATGGATAAGTCCTCACAAACAAGACGTTATACTGGAGGACAACCATGAT
GAAATAGAGAACTACGACCATCAAGCTGTTAAAAGATCGGACAGAGAGATTATAGCAAGA
GTTAAGAACTGTATCAGCGCACTGGTGGCCTCGAAGATGATGCTAGACGATACAAGTATT
ATGTTTGCATTTGAACAGAGCCTCAAATATGATAATGTGAAGGAACTCTTGGATCCAGAA
GCCATGTTGGATGTAGCGTTCCTTACACAACACATGCTAAATGATATTACTGAAGACTAG
Protein sequence:
MTGHVSIRLASERVNHCVPCPNELPRFYTPGEVITGMQDFMRGHGTYAEDDSLKSSVAGV
MQKVNKLICVRPLKSRYVGEIGDVIVGRVLEVQQKRWKVETNSRLDSILQLSSVNLPGGE
LRRRSAEDEQMMRKHLQEGDLISAEVQSVFSDGSLSLHTRSLKYGKLSQGVLVKVFPSLI
KRRKNHFHNLPCGVSIIIGNNGYIWISPHKQDVILEDNHDEIENYDHQAVKRSDREIIAR
VKNCISALVASKMMLDDTSIMFAFEQSLKYDNVKELLDPEAMLDVAFLTQHMLNDITED