| New model in OGS2.0 | DPOGS208999 |
|---|---|
| Genomic Position | scaffold2505:+ 13074-13910 |
| See gene structure | |
| CDS Length | 837 |
| Paired RNAseq reads | 44 |
| Single RNAseq reads | 107 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012527 (2e-92) |
| Best Drosophila hit | CG7675, isoform C (2e-50) |
| Best Human hit | retinol dehydrogenase 13 isoform 1 (6e-50) |
| Best NR hit (blastp) | PREDICTED: similar to RDH13 [Strongylocentrotus purpuratus] (4e-68) |
| Best NR hit (blastx) | predicted protein [Nematostella vectensis] (6e-59) |
| GeneOntology terms | GO:0055114 oxidation reduction GO:0016491 oxidoreductase activity GO:0008152 metabolic process GO:0003674 molecular_function GO:0008150 biological_process GO:0005739 mitochondrion |
| InterPro families | IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002198 Short-chain dehydrogenase/reductase SDR IPR002347 Glucose/ribitol dehydrogenase IPR016040 NAD(P)-binding domain |
| Orthology group | MCL13089 |
Nucleotide sequence:
ATGGGAAAAGTTGTTATTGTGACCGGTGGAAACTGCGGCATTGGCTTCGAGACAGCGAAG
AACTTAGCCGAGCGGGGAGCACGAGTTATTATCGCCTGTCGCAGCGTTCCACGAGGAGAA
AAAGCGGTTAATGAAATCATAGCAGCAACTGGAAATAAAAACGTACTTCATAGACAGCTT
GATTTTTCCACATTCAGATCCATACGCGAATTTTGTGATTATATATATAAAACAGAAGAG
CGTGTTGATGTCCTTATCAACAACGCGGGCGCCGGAGGGCTTGGCAACAAGAAGACTGAA
GATGGGAATCACGTTGGAATGCAGGTCAATTATTACGGACCTTTCCTTTTGACTAATCTC
ATGCTGCCGTTATTAAAAAAATCGGCGCCGAGTCGAATAATAAATGTATCATCGATGGCA
CACAAATACGCTGAAATGGATTTCGAAAATTTAAACATGGAAAAATATTGGAGTGATTAT
CTAGTTTATGCTAACAGCAAATTATTTTTGAATTTAATGACGCTGGAATTAAGTAAAAGG
TTAGAAGGGACTGGTGTTACAGTAAATTGTTTACATCCAGGCGCTGCGCCTACCAATATA
TTTAGAAACATTAAAACTAAGTTTATTCGTAACATAGTGATGATGGTTTTAGAGATCCTA
TTTAAATCTGTTTGGGAAGCCGCACAAACTTCCATATATCTGGCTGTATCGCCGGAAGTA
AATGATGTAAGTGGTCGCTACTTTGTAGATTGTAAAGAGAAGAAACCCTCTAAATTGTCG
CAGGACGGAGAAATCGCTAAGAAATTATGGATCGAAACAGAAAAGCTAGTAAAATAG
Protein sequence:
MGKVVIVTGGNCGIGFETAKNLAERGARVIIACRSVPRGEKAVNEIIAATGNKNVLHRQL
DFSTFRSIREFCDYIYKTEERVDVLINNAGAGGLGNKKTEDGNHVGMQVNYYGPFLLTNL
MLPLLKKSAPSRIINVSSMAHKYAEMDFENLNMEKYWSDYLVYANSKLFLNLMTLELSKR
LEGTGVTVNCLHPGAAPTNIFRNIKTKFIRNIVMMVLEILFKSVWEAAQTSIYLAVSPEV
NDVSGRYFVDCKEKKPSKLSQDGEIAKKLWIETEKLVK