New model in OGS2.0 | DPOGS214795  |
---|---|
Genomic Position | scaffold87:- 694-6683 |
See gene structure | |
CDS Length | 972 |
Paired RNAseq reads   | 8923 |
Single RNAseq reads   | 25845 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012104 (4e-108) |
Best Drosophila hit   | rhodopsin 5 (2e-91) |
Best Human hit | melanopsin isoform 1 (6e-35) |
Best NR hit (blastp)   | blue opsin [Danaus plexippus] (0.0) |
Best NR hit (blastx)   | blue opsin [Danaus plexippus] (1e-180) |
GeneOntology terms    | GO:0008020 G-protein coupled photoreceptor activity GO:0016021 integral to membrane GO:0007602 phototransduction GO:0009588 UV-A, blue light phototransduction GO:0016028 rhabdomere GO:0007186 G-protein coupled receptor protein signaling pathway GO:0016038 absorption of visible light GO:0007601 visual perception |
InterPro families    | IPR000276 GPCR, rhodopsin-like, 7TM IPR017452 GPCR, rhodopsin-like superfamily IPR000856 Opsin RH3/RH4 |
Orthology group | MCL17371 |
Nucleotide sequence:
ATGGCGACAAACTTCACAGAAGACATCGGCCCCATGGCTTACCCAATAAAAATGGTATCA
CAGGAGGTAGTCGAACACATGCTGGGATGGAACATTCCCGAGGAACATCAGGACCTGGTG
CACGAACACTGGCGGAACTTCCCAGCAGTCAGCAAATACTGGCACTTCGGCCTCGCCTTC
ATCTACACCCTGTTGATGCTCGCCTCCATGACCGGCAATGGAATCGTCATTTGGATATTT
AGCACGTCGAAATCTCTACGCAGTCCGAGTAACATGTTTGTTATCAATCTGGCGATCTTC
GACTTCATGATGATGTTTGAGATGCCGTTGCTCGTTCTGAACTCCTTCCACCAGAGACTG
CTCGGTTACCAACTCGGATGTGATATATACGCTGTGCTCGGCTCACTGTCTGGAATCGGC
GGCGCTATCACCAACGCCGTTATTGCTTTTGACAGATATAAGACAATCTCGAGTCCTTTA
GACGGTCGGTTGAACCACACGCAAGCTGCGCTGCTGATTCTCTTCACATGGGTGTGGGCA
ACTCCCTTCTCCTTCCTACCAGCTTTCAGGGTCTGGGGAAAATATGTACCAGAGGGTTTC
CTGACCACCTGCTCCTTTGACTTCCTGACCGAAGACGAGGACACGCGCGTCTTTGTGATG
TGCATCTTCGTATGGAGCTACGTCATCCCCATGTGCTGTATTTGCTACTTCTATTCTAAG
TTGTTTAGTGCTGTTCGTCTCCACGAACGCATGCTCAAAGAGCAAGCTAAGAAGATGAAC
GTAAAATCATTGGCAGCTAATAAAGATGATTCGGGCAAAAGCGTTGAGATTCGAATTGCG
AAGGTTGCCTTCACGATATTTTTCCTCTTCGTCTGCGCCTGGACGCCATACGCCTTCGTC
GCCATGACAGGAGCATTCGGTGACAGGTTATTTAACCACTTTTTATTATTTTTTACACCA
ATACACTATTAA
Protein sequence:
MATNFTEDIGPMAYPIKMVSQEVVEHMLGWNIPEEHQDLVHEHWRNFPAVSKYWHFGLAF
IYTLLMLASMTGNGIVIWIFSTSKSLRSPSNMFVINLAIFDFMMMFEMPLLVLNSFHQRL
LGYQLGCDIYAVLGSLSGIGGAITNAVIAFDRYKTISSPLDGRLNHTQAALLILFTWVWA
TPFSFLPAFRVWGKYVPEGFLTTCSFDFLTEDEDTRVFVMCIFVWSYVIPMCCICYFYSK
LFSAVRLHERMLKEQAKKMNVKSLAANKDDSGKSVEIRIAKVAFTIFFLFVCAWTPYAFV
AMTGAFGDRLFNHFLLFFTPIHY