| New model in OGS2.0 | DPOGS211679 |
|---|---|
| Genomic Position | scaffold3213:- 13015-14019 |
| See gene structure | |
| CDS Length | 1005 |
| Paired RNAseq reads | 169 |
| Single RNAseq reads | 549 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007809 (9e-73) |
| Best Drosophila hit | nicotinic acetylcholine receptor alpha 30D, isoform A (8e-13) |
| Best Human hit | neuronal acetylcholine receptor subunit beta-3 precursor (1e-17) |
| Best NR hit (blastp) | nicotinic acetylcholine receptor alpha 9 subunit [Bombyx mori] (5e-81) |
| Best NR hit (blastx) | nicotinic acetylcholine receptor alpha 9 subunit [Bombyx mori] (2e-79) |
| GeneOntology terms | GO:0006811 ion transport GO:0007165 signal transduction GO:0030054 cell junction GO:0006810 transport GO:0005886 plasma membrane GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0019717 synaptosome GO:0005216 ion channel activity GO:0007271 synaptic transmission, cholinergic GO:0042166 acetylcholine binding GO:0045211 postsynaptic membrane GO:0004872 receptor activity GO:0045202 synapse GO:0016021 integral to membrane GO:0015267 channel activity GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0005230 extracellular ligand-gated ion channel activity |
| InterPro families | IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006201 Neurotransmitter-gated ion-channel |
| Orthology group | ND |
Nucleotide sequence:
ATGACCTTCGACGACGACAAGGAGACGGTCACCGTGGTCAGTTGGGTCGTATTCAATTGG
AAGAATGAGTTCTTGACGTGGAACGCGAGCGACTACGGCGGCGCCCAGGAGGTCCAGATG
GAGAGTTACTCCATGTGGTCACCGATCTTCACCTTACTGAACGCGGACGTGAGCGTGTAC
ACCCCGGGCAGGGTCTACACTACTTGTTTGATCGCCAGCGACGGAGCAGTGACTTGTGTG
CCGCAGTTGACACATACGGGGCTCTGCAGCACGGCGCTGAGGAACTGGCCTCACGACCGA
AGGAACTGCACACTGTACTACACGTCGTGGATGCAGACGGAGGACAAGGTCAACCTGTCG
TTCCACGAGAAGGATCCCGTAGTGTTCCAGGACTTCCAAAGCGCGCCCGGCTGGAGACTC
CTGGACATAACACACGCTCGCCTCCCGGGCCAGCGGACCTGTTGCCCTTACAATGATCCC
GTGTTGACGATCTCCTTCATCTTAAAGAGGGAAGCTGCGGGTCTCGCGGCCACGGTGCTC
ATTCCCTCTGTGATCGTAGTGCTACTGACTTGTTCCTCTCTTCTGCTTACAGCCAGCCTT
AAAACCCGACTCTCCTTGCTATGTTTCGGTCTGTTCGGACACTTCGTTCTCCTCTCTCAA
GTCTGTTTCCTTCTGCCCACATTCAGCTCCGAGACTCCTAGCATATTATTGTTCATCCGG
CACTCCATCTTTATAACCTTGCTCTGTGTTTGGGAGACTTTAGGGATCATGTTTCTCATC
GGCAAAGTGTCTCCGGCTCCCGGTTGGGTCGTGTCCGCGAACAGCACGCTGATGAATGGA
CCGGCCAGGTATTTAGTGATCAGTGAGTTCGGTGCGTGTGCGAGCGGAGAGGACAGCGTC
CCTGATGACGGACGAGCCAACAGAGAGTGGACGAAGCTCGCCAACTGTACCTACGAGTTT
CCTTGTATTTCACTCCCACGCGTACTTAAGACGCTTCCTCCTTAA
Protein sequence:
MTFDDDKETVTVVSWVVFNWKNEFLTWNASDYGGAQEVQMESYSMWSPIFTLLNADVSVY
TPGRVYTTCLIASDGAVTCVPQLTHTGLCSTALRNWPHDRRNCTLYYTSWMQTEDKVNLS
FHEKDPVVFQDFQSAPGWRLLDITHARLPGQRTCCPYNDPVLTISFILKREAAGLAATVL
IPSVIVVLLTCSSLLLTASLKTRLSLLCFGLFGHFVLLSQVCFLLPTFSSETPSILLFIR
HSIFITLLCVWETLGIMFLIGKVSPAPGWVVSANSTLMNGPARYLVISEFGACASGEDSV
PDDGRANREWTKLANCTYEFPCISLPRVLKTLPP