| New model in OGS2.0 | DPOGS214124 |
|---|---|
| Genomic Position | scaffold680:+ 10839-11957 |
| See gene structure | |
| CDS Length | 879 |
| Paired RNAseq reads | 403 |
| Single RNAseq reads | 1784 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006173 (3e-110) |
| Best Drosophila hit | RNA polymerase II elongation factor (3e-74) |
| Best Human hit | transcription elongation factor A protein 2 isoform a (9e-68) |
| Best NR hit (blastp) | transcription elongation factor S-II [Bombyx mori] (1e-127) |
| Best NR hit (blastx) | transcription elongation factor S-II [Bombyx mori] (3e-126) |
| GeneOntology terms | GO:0003711 transcription elongation regulator activity GO:0045449 regulation of transcription GO:0005634 nucleus GO:0006368 RNA elongation from RNA polymerase II promoter GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0003702 RNA polymerase II transcription factor activity GO:0003746 translation elongation factor activity GO:0006354 RNA elongation GO:0005515 protein binding GO:0006357 regulation of transcription from RNA polymerase II promoter |
| InterPro families | IPR001222 Zinc finger, TFIIS-type IPR016492 Transcription elongation factor, IIS IPR017923 Transcription factor IIS, N-terminal IPR003618 Transcription elongation factor S-II, central domain IPR006289 Transcription elongation factor, TFIIS IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type IPR017890 Transcription elongation factor S-IIM |
| Orthology group | MCL11817 |
Nucleotide sequence:
ATGAGTGTCGAAGAAGATGTAATGAAAATACAAAAAAAATTAACTAAGATGACATCAGAT
GATGGCACGGGACAAGAGGAAGCTTTGGAGCTATTAAAAGCACTTCAAACTATGGCCATC
AATTTGGACGTGCTCACAAAAACCAGGATAGGTATGACTGTAAATGCTCTCCGTAAGTCC
AGTAAGGATGAAGAAGTTATATCTCTTTGTAAGACTTTGATAAAGAATTGGAAAAAATTT
TTGTCAACACCGACAACACCATCCAAGGATTCCGGCAGCTCCTCTAAACCAAAGAAAGAT
TCTAATAAGGACAAAGACAAAAAAGAGGAAAGGGAGAAAGACAAAAAATTGCCAGCGTCA
TTTCCTCCACAGTCAAACACAACCGATGCTGTGAGACTTAAATGTAGGGAGCTCCTTACA
CAAGCCCTCAAAATTGACGGTGAAAACCCAAATGCTTGCGCCACTCCAGAAGAACTGGCA
GAGGATTTGGAGGAATGCATTTATGCAGAGTTTAAGAATACAGATATGCGCTACAAAAAC
AGGGTCCGTTCAAGGGTAGCTAATTTGAAAGATCCAAAGAATCCAACATTAAGGACCAAC
TTCTTAAATGGTGTAATTAACGCTGCCCGCCTTGCCAAAATGACACCAGAAGAAATGGCA
AGTGATGAAATGAAAAAGTTAAGAGAGAAATTCATCAAAGAAGCCATTGACGATGCACAA
CTGGCTACTGTACAAGGTACTAAAACAGAGATGCTTAAGTGTGGAAAATGCAAGAAGAAG
AATTGCACTTACAACCAGCTTCAAACAAGAAGTTCCGATGAACCCATGACTACATTTGTA
CTCTGCAATGAATGTGGAAATCGTTGGAAGTTCTGTTAA
Protein sequence:
MSVEEDVMKIQKKLTKMTSDDGTGQEEALELLKALQTMAINLDVLTKTRIGMTVNALRKS
SKDEEVISLCKTLIKNWKKFLSTPTTPSKDSGSSSKPKKDSNKDKDKKEEREKDKKLPAS
FPPQSNTTDAVRLKCRELLTQALKIDGENPNACATPEELAEDLEECIYAEFKNTDMRYKN
RVRSRVANLKDPKNPTLRTNFLNGVINAARLAKMTPEEMASDEMKKLREKFIKEAIDDAQ
LATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRWKFC