New model in OGS2.0 | DPOGS215714  |
---|---|
Genomic Position | scaffold951:+ 116022-126611 |
See gene structure | |
CDS Length | 984 |
Paired RNAseq reads   | 572 |
Single RNAseq reads   | 1483 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005808 (3e-106) |
Best Drosophila hit   | CG2254 (8e-76) |
Best Human hit | epidermal retinol dehydrogenase 2 (1e-45) |
Best NR hit (blastp)   | short-chain dehydrogenase [Culex quinquefasciatus] (5e-89) |
Best NR hit (blastx)   | short-chain dehydrogenase [Culex quinquefasciatus] (4e-85) |
GeneOntology terms    | GO:0016491 oxidoreductase activity GO:0055114 oxidation reduction GO:0005488 binding GO:0005811 lipid particle |
InterPro families    | IPR020904 Short-chain dehydrogenase/reductase, conserved site IPR002198 Short-chain dehydrogenase/reductase SDR IPR002347 Glucose/ribitol dehydrogenase IPR016040 NAD(P)-binding domain |
Orthology group | MCL10489 |
Nucleotide sequence:
ATGCTAAACGGTTTATTGGGATCGGTAAGTCAGCTTGTGGCGAAGAACACACGTTCAGAG
CGACACATGGATTTTCAAGGAGCTCTACAAGTCGTGTTCGACTTACTATGGACTTTGATA
AAGGTCAATTATTTGACGGTGGTCGGCATGTGGCGAACCATAATGCCACCAGATCCAAAG
GATGTACGGGATGAAGTCGTTCTCATCACGGGTACCGGTCATGGCATCGGTCGTGAGATG
GCGTTGCGGTTCGCAAGACTCGGAGCTACCCTGGTGTGTGTCGACATCAACGCCTCCACC
AACGAGGAAACCGTCAGGATCATCAAACAGGAGAAGAATAAGGCATTCAGTTATCAGTGT
GACGTCACCGATCGCGCTGCAGTGATGCAAATGGCTGAAAAAATCCGTCATGAAGTTGGC
GAGGTGTCGATCCTCGTGAACAACGCTGGGATCATGCCCTGCAAGCCGCTCCTTAACCAG
ACGGAGAAAGAAATAAGACTGATGAACGACATCAACGTCAACGCTAACCTATGGATGATC
CAAGCTTTTCTTCCATCAATGATGGAGAGGAACCACGGTCATATAGTGGCGATGTCCTCT
ATGGCGGGGCTGATGGGACTTCGCAACCTGGTTCCGTACTGTGGGTCAAAGTACGCAGTC
AGAGGCATCATGGAGGCATTGGCGATTGAACTCAAAGAGGATCCAAGAGAGTTTAGCGGG
ATTAAATTCACAACGATATGTCCATACATGGTTGACACTGGGTTATGCAAGAAACCTCGC
ATCCGGTTTCCTAGTCTGATGAAGGTGGTGTCTGCTAGTGAGACCGCTGACTTGATCGTT
GACGCTGTAAGGAGAGACATCTTGGAGATCACCGTCCCACAGGAACTGCACTTCATGAAC
AGATACATTTATCGTTTCCTACCGTTCCCCGCTGCCGTCGCTTGGAACGAGTTTTTCAAC
ACGGGTGTCGACTCCCACGAATGA
Protein sequence:
MLNGLLGSVSQLVAKNTRSERHMDFQGALQVVFDLLWTLIKVNYLTVVGMWRTIMPPDPK
DVRDEVVLITGTGHGIGREMALRFARLGATLVCVDINASTNEETVRIIKQEKNKAFSYQC
DVTDRAAVMQMAEKIRHEVGEVSILVNNAGIMPCKPLLNQTEKEIRLMNDINVNANLWMI
QAFLPSMMERNHGHIVAMSSMAGLMGLRNLVPYCGSKYAVRGIMEALAIELKEDPREFSG
IKFTTICPYMVDTGLCKKPRIRFPSLMKVVSASETADLIVDAVRRDILEITVPQELHFMN
RYIYRFLPFPAAVAWNEFFNTGVDSHE