| New model in OGS2.0 | DPOGS201958 |
|---|---|
| Genomic Position | scaffold5971:+ 498-10122 |
| See gene structure | |
| CDS Length | 3003 |
| Paired RNAseq reads | 4360 |
| Single RNAseq reads | 10303 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011215 (6e-40) |
| Best Drosophila hit | protein associated with topo II related - 1 (6e-27) |
| Best Human hit | protein PAT1 homolog 1 (4e-11) |
| Best NR hit (blastp) | PREDICTED: similar to protein associated with topo II-related 1 [Tribolium castaneum] (6e-53) |
| Best NR hit (blastx) | PREDICTED: similar to protein associated with topo II-related 1 [Tribolium castaneum] (3e-37) |
| GeneOntology terms | GO:0000932 cytoplasmic mRNA processing body GO:0033962 cytoplasmic mRNA processing body assembly |
| InterPro families | IPR019167 Topoisomerase II-associated protein PAT1 |
| Orthology group | MCL11846 |
Nucleotide sequence:
ATGGCAGATTCTTTTTTCGGGATCGATACTTCGTCATCGAACTTAAATGACGACGAGGGT
GGCGGGGAGCCTTCGGAAGACGAGTATGATGCCCTCAACGATGAAACATTTGGACAGGAT
TCTGAAGAGTTTGACTGGGAGTATGAACACGAACAGCTGGCCGGACAGCTGGAGAGCAGT
CGACGGAATGCAGCACTTGACGACGCTGACTCCAGGCTTGAGGCATCTCTCTCTCAGCTA
GTGTTGGATGAAACGGATGCTCCACGAAGCCTCGGGTCCAGCGTCTGGAGACATGACGTT
CCGTTTCCCACACCAACAACGCCGGTACAACAGCCAGCCCTCAAGAATGTGTGCACAGTG
GAGGAACTGGAAAGACAGCTGCGACAGAACCAGCAACAGACGTACACACAGAACTACTTT
CAACCGCGGTTTCCACCTGTTATCCTGCAACGGCCTCCAGGTCTACAGGCACCACTTCCG
ATACCGTTCGCACCACAGCAATCTATGGCACATAATATGAATCAAATGAACCAGCCGTTG
AATAAAATGATTGGACAAAACTCACAAATCAACCAAATCGGCCAATCGAATATGATGAAT
CATATGAACCAGAACATAAATCAGATTGGTTCTAATATAAATCAGATGAATCAGAATGTA
AATCAGATGGGTCAAGGTGTTAATCACATGGGACAAAATGTTATGGGTCAAAATCAAATG
GGACAAAATGTTATGGGTCAGAATCAAATGGGGCACAATGTGAACCAATTCATGCAAAAT
TCAAACCAGATGAATCAGTTTCAAAACAACCAAATGGCACCGGCGATGATGAACCAAATG
CATAACATGAATCTTCATCCCATGAATCAGAACAATCAAATGATTCAAAACCAAATGGGT
CAAAACATGAATCAGATGGTACAAAACTCTGGGTCTAACATGAATCAAATGAATCAGGGG
GGTCAAAACATGAATCAAATGGGCCAAAATATGAATCAAATGGGTCAAAATATGAACCAA
ATGGGTCAAAATATGAATCAGATGGGTCAAAATCAGATGATCCCAAACGGTAACCAGTTT
GGTATGAATCAGTTCCAACAAATGATGGGTCAGCCTCGAATGATGGCGCCGCCCCCCGGC
ATGAATATGCCAAGACAAAATTTTGGCAATAATATGAATCAATTTAATACAAATTTTCGT
GGACAAATGCAATCAAAAAACGATCAGCAAATATCACAACAGAACATGATTATGAACCAC
AATAAAAACCAGAACCAGGTAAAACCGAACCAGCTGTCACCGAAGCAGAAACCGGTACAG
AATTTGAACCACATCCAGAATATGAACCAGGCTCAGAACAACAAGTTGCAGAAGAGTCGC
GTATATAATAACAAGAGCTTAACATCTCAAAACCTGGTCCAGCTGATCCAGAACACGCAT
CCCATGTTGAACTTCAACAACAGCTTCCACAACGCCAGCCATCACCCCATCCTCAACAGA
AACCATTTCAACAACCAGCTCATGAAACATCTCATGTTCGACAACAGGCAGAACGGGAAT
TTTGGCAACACAACCAGCAGAGCGAACACCTCAGTTGACGGGGAGCTGGATGAGTATGCA
GGTCTAATGACGGCCAGAGAGAAACAATGGCTCATCAATATCCAGATGTTGCAGCTGAAC
ACCGGAACACCTTACATACATGACTTCTATTATACAGTTTTCCTCGAGAGACAGGCAAGC
AAGGAAAAGGAAGGTGTGAAGGAGGCTCATAAGGCCAATCAACAGAACCATCCCTTCTAC
AGCGGAGGCAAGCAGGAAGACAGTCACGCCATGAGACAGAGAGAGAGGCACAACTCGCAC
AGACACAACTCCACCGGAGAAGATCCCAGGACATATGTCCCTACACAGTTTGAGAACTCC
CTGGGGAAACTGCAGTGCGGTAGCGTGACGGCTCCGAGGAAAATTATAGACGTGGAAGTC
GTGGGGGCGGAGCCCGAGCAGCGAGCGAGCAGGGCGCCCTCTGTGGCCAGCAACAACCCC
ACTGAGGTTCCGCGCGAGATGAGAAGGACCAAGCAACTGCTTCTGGATATTGAGGCGTTG
TATCTCATACTGCTCAGACTGGAAGAGCTCAACGATCCCTTGGCAATATCTAACGCTTTA
ATATTGAAGGAAAGAGAAGAGAAGCAGAAGCAACTGGAAGCGGCGCAGAAGGAAGCAGAA
GATGACGATGATGGAAACTTATTCCTTAAGAATATAGAATCTGTACAGAGACGACCCAAG
CAGGAGAGTCCCAAGAGCGAGAGTATCGATAAGAGACAGGTGGTGAACCTGACCACGAAC
CAGAAACCTCAACCGGCCAAGAACCTGCTGGATGAAGACAAGGAGGACCTGCTCAATAAG
ATGTTCTCCGGACTCCTGCACGGAGAGAGAGTGCCGCAGATACTGGCGGTTAGGAAGGGG
AAGTCGTTGCTAGCTCGTTTCCTGGCCCGCACCCCCGAGACTCACCCCCGTCTTCGTCCT
CTATGGTCGAGGGTGCTCCGCTGTCTGCCGACCGCTGCTCGCCGCGACGAAGGCGGCGCC
CTAGTGTCCCTGGAGCCCCACTTCCGGCGCTACGCTCTCGCGGCGCCCGGCTGGCCGGCG
GTGGCGGAGACCTGCGCCGCGCTAGCGGAGGCCCTGGACCCCGCCCGCGGCCACCACGCG
CTCGACACGCGACTGACTCTGAGCTGCGTCTGCGCGCTCACCGAGAAAGCGATGATGCTG
GTGGGGGTGTCGGAGTCGTCCGGCGGCGAGCGGCAGTGGTACAGGTTCCTCAAGACGGTG
GCGAAGGCCCTGAGACACGCGCCGAGCGTCGCCCCGCCCACCCGGCCCGTGGCGGAGGCC
CGGCTCTCGGCGCACCTGAAGCGGCTGGAGGCCCGCGCGGGGCTCGAGATCCTGCAGAGA
GGCGCCACCATCGAGCTGTCCGCCAAGGACGCCGCGGAACACCTCGTGAGGCACCTCTGC
TGA
Protein sequence:
MADSFFGIDTSSSNLNDDEGGGEPSEDEYDALNDETFGQDSEEFDWEYEHEQLAGQLESS
RRNAALDDADSRLEASLSQLVLDETDAPRSLGSSVWRHDVPFPTPTTPVQQPALKNVCTV
EELERQLRQNQQQTYTQNYFQPRFPPVILQRPPGLQAPLPIPFAPQQSMAHNMNQMNQPL
NKMIGQNSQINQIGQSNMMNHMNQNINQIGSNINQMNQNVNQMGQGVNHMGQNVMGQNQM
GQNVMGQNQMGHNVNQFMQNSNQMNQFQNNQMAPAMMNQMHNMNLHPMNQNNQMIQNQMG
QNMNQMVQNSGSNMNQMNQGGQNMNQMGQNMNQMGQNMNQMGQNMNQMGQNQMIPNGNQF
GMNQFQQMMGQPRMMAPPPGMNMPRQNFGNNMNQFNTNFRGQMQSKNDQQISQQNMIMNH
NKNQNQVKPNQLSPKQKPVQNLNHIQNMNQAQNNKLQKSRVYNNKSLTSQNLVQLIQNTH
PMLNFNNSFHNASHHPILNRNHFNNQLMKHLMFDNRQNGNFGNTTSRANTSVDGELDEYA
GLMTAREKQWLINIQMLQLNTGTPYIHDFYYTVFLERQASKEKEGVKEAHKANQQNHPFY
SGGKQEDSHAMRQRERHNSHRHNSTGEDPRTYVPTQFENSLGKLQCGSVTAPRKIIDVEV
VGAEPEQRASRAPSVASNNPTEVPREMRRTKQLLLDIEALYLILLRLEELNDPLAISNAL
ILKEREEKQKQLEAAQKEAEDDDDGNLFLKNIESVQRRPKQESPKSESIDKRQVVNLTTN
QKPQPAKNLLDEDKEDLLNKMFSGLLHGERVPQILAVRKGKSLLARFLARTPETHPRLRP
LWSRVLRCLPTAARRDEGGALVSLEPHFRRYALAAPGWPAVAETCAALAEALDPARGHHA
LDTRLTLSCVCALTEKAMMLVGVSESSGGERQWYRFLKTVAKALRHAPSVAPPTRPVAEA
RLSAHLKRLEARAGLEILQRGATIELSAKDAAEHLVRHLC