| New model in OGS2.0 | DPOGS211835 |
|---|---|
| Genomic Position | scaffold229:+ 95383-123449 |
| See gene structure | |
| CDS Length | 894 |
| Paired RNAseq reads | 813 |
| Single RNAseq reads | 1890 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006020 (8e-116) |
| Best Drosophila hit | RluA-1, isoform C (1e-95) |
| Best Human hit | RNA pseudouridylate synthase domain-containing protein 2 (1e-56) |
| Best NR hit (blastp) | ribosomal pseudouridine synthase [Aedes aegypti] (5e-120) |
| Best NR hit (blastx) | ribosomal pseudouridine synthase [Aedes aegypti] (2e-104) |
| GeneOntology terms | GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity GO:0009231 riboflavin biosynthetic process GO:0009982 pseudouridine synthase activity GO:0001522 pseudouridine synthesis GO:0003723 RNA binding |
| InterPro families | IPR006224 Pseudouridine synthase, RluC/RluD, conserved site IPR002942 RNA-binding S4 IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F IPR020103 Pseudouridine synthase, catalytic domain |
| Orthology group | MCL11391 |
Nucleotide sequence:
ATGCAGGCGGGAGGGGGGTGGTTTGTGCCTTGGACGATGGGGGTACAAAAGTTCGCGGTA
GCGCTGCCGATGGGTGGTGTGGTGCCATTGGTACCGCCACTGTTAGCAGCATTGCCACCA
CAGCCACCGCCGCTCAGACTCATCGCTCCGCCCTTGGCACATCAATCGCAATCTGGCAGG
AAGGGTGAGAAAGACAACGCCAAAAACTGCATACTATCCTGCGAGAAGCGAAAAGCAGAC
GATTCGGACGTCAACAAAGATTTGAAAAAGGCTAAACTCGAAACAAAAGCTCTGAAGGCA
AAAAGACCTGGGTTCACGGATGACAGATACAACGAAACTTCTTATTATATAGAAAATGGA
CTTAGAAAAGTTTACCCCTACTATTTTACGTTCACAACCTTCACTAAAGGGAGATGGGTA
GGTGAGAAGATACTCGACGTTTTCGCGAGGGAGTTTAGAGCTCATCCCGCTGCGGAGTAC
GAGAGATGCATCAGGGCTGGCACATTAACGGTCAACTATGAACGTGTCGATCCAGATTAT
AGGCTGAAACACAACGATCTGTTAGCGAACGTCGTCCACAGGCACGAAGTACCAGTCACC
AGCCAACCGATCACCCTCGTACATATCGACGAGGACATTGTGGTTGTCAACAAACCAGCC
TCTATCCCCGTACACCCATGCGGGCGGTATCGACACAACACAGTTGTTTTCATACTCGCC
AAGGAATATAACCTCAAAAACCTTAGAACCATTCATAGACTCGACAGGCTAACTTCCGGT
CTCCTATTATTCGGGAGGAGTCCAAAGAAAGCCAGGCAAATGGAACATCAGATAAGGAAC
AGACAGGTGCAGAAGGAATATGTTTGTCGAGTCGATGGAGAGTTTCCTGAGTGA
Protein sequence:
MQAGGGWFVPWTMGVQKFAVALPMGGVVPLVPPLLAALPPQPPPLRLIAPPLAHQSQSGR
KGEKDNAKNCILSCEKRKADDSDVNKDLKKAKLETKALKAKRPGFTDDRYNETSYYIENG
LRKVYPYYFTFTTFTKGRWVGEKILDVFAREFRAHPAAEYERCIRAGTLTVNYERVDPDY
RLKHNDLLANVVHRHEVPVTSQPITLVHIDEDIVVVNKPASIPVHPCGRYRHNTVVFILA
KEYNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEHQIRNRQVQKEYVCRVDGEFPE