| New model in OGS2.0 | DPOGS208894 |
|---|---|
| Genomic Position | scaffold53:- 126702-133497 |
| See gene structure | |
| CDS Length | 2925 |
| Paired RNAseq reads | 1063 |
| Single RNAseq reads | 3013 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002460 (5e-154) |
| Best Drosophila hit | Dis3 (0.0) |
| Best Human hit | exosome complex exonuclease RRP44 isoform a (0.0) |
| Best NR hit (blastp) | AGAP005191-PA [Anopheles gambiae str. PEST] (0.0) |
| Best NR hit (blastx) | AGAP005191-PA [Anopheles gambiae str. PEST] (0.0) |
| GeneOntology terms | GO:0000177 cytoplasmic exosome (RNase complex) GO:0006397 mRNA processing GO:0000176 nuclear exosome (RNase complex) GO:0000175 3'-5'-exoribonuclease activity GO:0003723 RNA binding GO:0005652 nuclear lamina GO:0005634 nucleus |
| InterPro families | IPR001900 Ribonuclease II/R IPR022966 Ribonuclease II/R, conserved site IPR006596 Nucleotide binding protein, PINc |
| Orthology group | MCL13446 |
Nucleotide sequence:
ATGCAGTGGACTACAAAAACTTTTTTAACAAAAACAAAACGCGGCAATGTTTTGAAAATT
GTAAGGGAGCACTATTTACGTGATGATTTGCTATGTGGATCTGCTGTGTGTCACATTTGT
CCCCATAAAGACGATGAGATTGTATTAGACACTAAACCAGAATCCATTTGCAAATTATTT
GATTTTGAACATTACCTAGTTCTTGACACCAACGTAGTCCTTCATCAGATAGATGTTTTA
GAAGAAAATGCTTTGAAAAATGTTATAATATTACAAACAGTTCTAGAGGAAGTAAAGCAT
CAGAATACTGCTATTTTTCAAAGACTGTTAGAAATAGTGGGAAATAAGAATAGGAAATTT
TATTCCTTTGTGAATGAACATCATAAAGACACTTATGTGGAAAGAAATCCTCATGAAAAA
CAAAATGACCGTAATGATCGTGCAATCAGAAGGGCAGCATCCTGGTATGCATCTCACTTG
TTGTTATCAAAGAGTGATATTGATGGTAAAATACCTAAAATTATTTTGCTCACCGATGAT
GAGAATAACAGAAAGATTGCTCAAAAGGAAGGAATTGTTTGTTGTACAGTCAAGGAATAT
GTTGAAAATATCACTGGATATCCTGGTTTGGTTGATAAATTATCTAAGAATGTTATGCCA
GAAGCCTGTTCTAAGGATGCATTATATCCTGCTCACTTAACACCAAGTCAGATCCATTCT
GGTATAAGGGGCGGGAAGTTATATCAAGGAACATTTCATGCATCCAGGGATAATTTCCTA
GAGGGTACAGCAGTTGTCAGTTCTTTTGATAAGCCTATTCTTCTACAAGGTCACAGTGGT
ATCAACAGAGCTATAGACGGCGATATTGTTGCTATTGAAATTTTACCCAAAGAAGAGTGG
AGAAAACCAAGTGACATTGTTCTGGAAGATAAGGCAGATGATCCGGGTGACACGCTCGAA
GAAGAGACTCTTCTTAATACTAAGGTGGACAGTGAAGATGAAATAACACCAACTGGAAAA
GTTGTTGGCATTATAAGAAGAAAATGGCGACAGTATTGTGGTATTCTGTTGCCGAGTAAA
TTTCCAGGAGCCACGAGACATCTGTTCACCCCAGCTGAAAAAAGAATTCCCAGAGTTCGA
ATAGAAACCCGTCAGAGTGATATACTTATTTCTCAGAGGATTCTGGTTGCATTGGATTCT
TGGCCAAGGAACAGTAGATATCCGTTAGGACATTTCGTAAGATCGCTCGGCCCTATAGGT
GACAAAGATGCTGAGAACGAGGTAATTTTACTGGAACATGATGTACCTCATGCAAGATTC
AGTGAGGCGGTGCTGGCATGTCTGCCCCCAGATGACTTCAAAATACCGGAAGAGGAGATA
AAGAAACGGGTTGACTTGCGTTCAATATGTATATGTTCAGTGGATCCTCCCGGCTGTACC
GATATCGATGATGCTCTGCACGCGCGGCCGCTCCCAGGTCTGTCGCCGGACGGCTTGAAC
ACTTACGAAGTTGGAGTTCATATCGCGGATGTCACTTACTTCGTGAGACCTAACACTGCC
CTCGACAGGGAAGCAGCGGCCAGGTCCACTACAGTTTATTTAGTGGACAGGAGAATTGAC
ATGGTCCCAGGTCTTTTGAGTTCGAACCTATGTTCTCTGCGCGGTGGTGAAGAGAGGTTG
GCTTTTTCATGTGTGTGGGTTGTCGATGAGAACGCTAATGTTTTGTCAACCAAGTTCCAT
AAGAGCGTTATAAAGATGTCTTCATCGGCTATGACGTATGAGGAAGCGCAAATAGCAATC
GATGACGCAACCAGATGTGACGAGATCGCCTCGTCACTGCGAACACTGAACTCTTTGGCT
AAAAAGTTAAAGCAGAAGAGACTGGACAATGGCGCTCTCTTGCTGGCGTCGCCAGAAATA
CGTTTCCAGGTCGACTCCGAGACCCACGATCCCATAGAAGTCCAGGCAAAGAAGATAATG
GACACTAACTCTATGGTGGAGGAATTCATGTTGTTGGCGAACGTGAGTGTGGCTGAACGT
GTGGCGGCCGACTACCCGCGGTGTGCGCTACTCAGGAGACATCCGTCGCCACAGCTGCAC
AGCTTTGACACGTTCCTCAAGGCTGCCAGGCAACAGGGCTTCGAGTTGGATGTATCGACG
AATAAGTCGTTCTCAAAGTCCCTCAACGAAGCTGTGATACCCGACCGTCCGTTCTTCAAC
ACTCTCCTCCGTATAATGGCGACCCGCTGTATGCAGCAGGCCGTGTATTTCCCAAGCGGG
ACTCGAACCCAGGAAGAGTTCTACCACTATGGACTGGCCTGTCCTATTTACACACATTTC
ACATCGCCAATACGCAGATATGCAGATGTCATAGTACATCGTCTGCTGGCGGCCAGTATA
GGCGCGGACGTGAGTCACGCTTCTCTACTCGACACTAAGGCGGCGGACGCACTGTGCGAC
AACCTCAACTACCGACACCGACAGGCGCAGTACGCGGGTCGCGCGTCTGTGGCGCTCAAC
ACGCATATATTGTTCAAGAATCGCGAAGAAATCGAATCGGCGGTGGTGCTTGCTGTGAAA
CGAAATGCGCTGCAAGTTCTTATACCTAAATACGGACTTGAAGGACCCATATACCTCCCG
TCCGATAAGTTCAGATACAACGAAGAGGAGCACGTCCAAATCTGCGGTGACGTCATCTTG
CGTACGTTCGACGAACTAACCGTCCGTCTGACGTTAGACAGCACTAACCTACAACACAGG
AAACTAGTTTTCCAACTGGTGAAGCCGAGCATACCGGGAGTAAGTTACACTGCTCAGGAG
CAAGTGGAAAAAATGGAAATCGTCGAAATAGACAAAAAGGAAAACGAAAAGAAAAGAAAG
GAAAGCAAAGGCGGCAAAAACAAGAAAAAGAAATACAAGAAATGA
Protein sequence:
MQWTTKTFLTKTKRGNVLKIVREHYLRDDLLCGSAVCHICPHKDDEIVLDTKPESICKLF
DFEHYLVLDTNVVLHQIDVLEENALKNVIILQTVLEEVKHQNTAIFQRLLEIVGNKNRKF
YSFVNEHHKDTYVERNPHEKQNDRNDRAIRRAASWYASHLLLSKSDIDGKIPKIILLTDD
ENNRKIAQKEGIVCCTVKEYVENITGYPGLVDKLSKNVMPEACSKDALYPAHLTPSQIHS
GIRGGKLYQGTFHASRDNFLEGTAVVSSFDKPILLQGHSGINRAIDGDIVAIEILPKEEW
RKPSDIVLEDKADDPGDTLEEETLLNTKVDSEDEITPTGKVVGIIRRKWRQYCGILLPSK
FPGATRHLFTPAEKRIPRVRIETRQSDILISQRILVALDSWPRNSRYPLGHFVRSLGPIG
DKDAENEVILLEHDVPHARFSEAVLACLPPDDFKIPEEEIKKRVDLRSICICSVDPPGCT
DIDDALHARPLPGLSPDGLNTYEVGVHIADVTYFVRPNTALDREAAARSTTVYLVDRRID
MVPGLLSSNLCSLRGGEERLAFSCVWVVDENANVLSTKFHKSVIKMSSSAMTYEEAQIAI
DDATRCDEIASSLRTLNSLAKKLKQKRLDNGALLLASPEIRFQVDSETHDPIEVQAKKIM
DTNSMVEEFMLLANVSVAERVAADYPRCALLRRHPSPQLHSFDTFLKAARQQGFELDVST
NKSFSKSLNEAVIPDRPFFNTLLRIMATRCMQQAVYFPSGTRTQEEFYHYGLACPIYTHF
TSPIRRYADVIVHRLLAASIGADVSHASLLDTKAADALCDNLNYRHRQAQYAGRASVALN
THILFKNREEIESAVVLAVKRNALQVLIPKYGLEGPIYLPSDKFRYNEEEHVQICGDVIL
RTFDELTVRLTLDSTNLQHRKLVFQLVKPSIPGVSYTAQEQVEKMEIVEIDKKENEKKRK
ESKGGKNKKKKYKK