| New model in OGS2.0 | DPOGS200190 |
|---|---|
| Genomic Position | scaffold352:+ 26273-62098 |
| See gene structure | |
| CDS Length | 2385 |
| Paired RNAseq reads | 5052 |
| Single RNAseq reads | 15176 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005097 (3e-118) |
| Best Drosophila hit | similar, isoform A (5e-79) |
| Best Human hit | hypoxia-inducible factor 1-alpha isoform 2 (1e-76) |
| Best NR hit (blastp) | PREDICTED: similar to hypoxia-inducible factor 1 alpha [Tribolium castaneum] (4e-137) |
| Best NR hit (blastx) | PREDICTED: similar to hypoxia-inducible factor 1 alpha [Tribolium castaneum] (2e-127) |
| GeneOntology terms | GO:0003702 RNA polymerase II transcription factor activity GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0016563 transcription activator activity GO:0007165 signal transduction GO:0004871 signal transducer activity GO:0006974 response to DNA damage stimulus |
| InterPro families | IPR000014 PAS IPR001610 PAC motif IPR013655 PAS fold-3 IPR013767 PAS fold IPR001067 Nuclear translocator |
| Orthology group | MCL11421 |
Nucleotide sequence:
ATGCAAATCTTCGCGGAGCTGACAGCATCACTACCAGCTAAGAAGGAAGACGTCGAACAG
TTGGACAAAGCTTCCATAATGAGACTCGCCATATCATATCTACGTGTGCGTGATGTTGTG
TCTATGTTGCCAGAAGATAAGGAGGTTCCGTTAATGCAGAGTCCCAAAGGCCTGGAGGAG
ATCCAATCAGAGCTTTCATATATGAAAGCGTTGGATGGATTTGTTCTGGTCCTATCCCAA
CAGGGCGACATCGTCTACTGCAGCGAGAATGTTGCTGAGCATCTTGGAGTTTCACAGATG
GAGGTCATGGGTCAGAGTGTGTTCGAGTTCAGTCACCCCTGCGACCACGAGGAGGTGAGG
GAGGCTCTGAGGTCAAGTAAAGATGGCAAGAGAGACCTATTGTTGCGTCTCAAGTGCACT
CTCACCAGTAAAGGGAGGAACGTTCATCTCAAATCTGCTTCTTATAAGGTGATCCACGTA
ACTGGACACATGCTGACAGAAGAAAATCAAACTGATGGAGATAAAGATACAAAGAAAATC
GGCAAATCCGCGCTCGTAGCTGTGGGAAGACCGATACCTCATCCATCCAACATAGAAACT
CCTTTGAACAATATGACTTTCCTCACAAAGCACAGCTTGGACATGAAATTCACTTATAGT
GATGAAGGTCTTCAAAATGCCCTTGGATATGATTCCAATGATCTGGTCGGTCATACCCTG
TATGACTACCATCATGCAGGCGACAGCGCTGTACTGCTGCAGCAATTTAAATCATTGTTC
TCTAAGGGACAATGCGAGACCGGACAATACCGATTCCTCGCCAAGAAGGGCGGCTACGCC
TGGGTCCAAACCCAGGCCACCGTCATCACAGACAAGCAACAAAAGCCGATTAGCGTCATC
TGCGTCAACTACGTCATCAGCGGTATCGAGTGCAAAGATGAGGTGTTCGCTGCACACCAA
GTGCAGCACGCAGACTTGAAGCCTGCCGTGGCTCCGACTATACCAGAAGCTAATCCAGCA
CAGATTTGTGTGGCCACTGAACCATCTAACGGTGCTATAGTGGCCGCTGTCCTTCCAGAA
GAAGAGCGCCCTGTACCCGTTACTGAACTTATATTTGCACCCAGAAAGAAGGAAATGAAT
AAAGGATTTCTCATGTTCTCTCCTGACGAGGGACTTACAATGCTTAAAGACGAGCCGGAG
GACCTCACACATTTGGCGCCGACGGCTGGAGATGCTTGCATTCCTTTAGAGAACAGCCCT
TTTGACATGTTTGACGAATTCATTTTAAGTGACAATTATTGCAGTCTACTTGGTGATGAT
CTGACTAGTGGATCACCAGTAGATTCGTTGATAGCGGATTCCTTACTCTCGTCCCCAGAG
CCACAGGAAACCGAATCATCGTGCGAACAGTCGTCGCTTCTGAACGAGTTGTCTTTGGAT
GCGTTTGATAGTAACAAGTCTGAGAATGACATCGACGATGGACATTCACCATTCATTCCC
ACTACTGACGAGCTTCCCCTTCTGGAGCCAGCAGTTATGTGGGGGGCTCTGCCTGACAAC
GTGTGCCAGGCTAGACCTCAACCGACCGAAGTTCAAAGCCCCGCACCAGCGTTGCAGCGC
TTACTAGCAGCGCCACCGACCGGGCCACGACCGCAAGATCTCATCACAAATATATATTCA
GATCAAGGTCTTATTCCAAGCAAGATATCAACATGGGACACTGGTGTTAAGCGTGTTTTG
ACCAAAGACGAAGAGCCTTCAGCGAAACGCGTGAAGCGTAGTCCGTCACCGACAACGAAT
CAGACCTCAAGCGTCCTTATGAACCTCCTGGATGTCCATAATAATGGAAAGACGACGAAT
CAGCTGCCAAAATATCAGATGCTAGTCACTCCACCGACAGCCTCGCCTCAAAGCCCAATC
CGAAACATCCCGGTGCCGGTCATAAACATGATGCAGCCCAATCAGCAACTCCGAAACACG
ATAACCAATCAAATAAGCACAAACATATCAAATCCAATGTCCCCACTGACTTTAAACGTC
GGAAGTCCATTATACTCCCTGCCATCAAGTCCAGCTATAAGTCCAATCCAAAGAGATCGC
GTTCTGAGCCCCTACTCCACTCCCCAATCTTTATCACCCGCCGGTAGTTATCAAATGTAC
AGCCCGAATAGCAACATTCTCCTATCACCCTCCGGAGTAATGCAAGGTTATGATCCGTAT
TTGACGAATAAAATGCAAACTAGCCCCGGATATCCTCTCCAGACGTCAGATATGCTGATG
GATTCCAACATCCAGCTGCAATCTGCCGACTTCTGGTCTGATTCTGAGATGCTGCAAGGC
ACGAGCGATCTCCTCACAGCATTCGACGACGTCAAATTGGTGTAA
Protein sequence:
MQIFAELTASLPAKKEDVEQLDKASIMRLAISYLRVRDVVSMLPEDKEVPLMQSPKGLEE
IQSELSYMKALDGFVLVLSQQGDIVYCSENVAEHLGVSQMEVMGQSVFEFSHPCDHEEVR
EALRSSKDGKRDLLLRLKCTLTSKGRNVHLKSASYKVIHVTGHMLTEENQTDGDKDTKKI
GKSALVAVGRPIPHPSNIETPLNNMTFLTKHSLDMKFTYSDEGLQNALGYDSNDLVGHTL
YDYHHAGDSAVLLQQFKSLFSKGQCETGQYRFLAKKGGYAWVQTQATVITDKQQKPISVI
CVNYVISGIECKDEVFAAHQVQHADLKPAVAPTIPEANPAQICVATEPSNGAIVAAVLPE
EERPVPVTELIFAPRKKEMNKGFLMFSPDEGLTMLKDEPEDLTHLAPTAGDACIPLENSP
FDMFDEFILSDNYCSLLGDDLTSGSPVDSLIADSLLSSPEPQETESSCEQSSLLNELSLD
AFDSNKSENDIDDGHSPFIPTTDELPLLEPAVMWGALPDNVCQARPQPTEVQSPAPALQR
LLAAPPTGPRPQDLITNIYSDQGLIPSKISTWDTGVKRVLTKDEEPSAKRVKRSPSPTTN
QTSSVLMNLLDVHNNGKTTNQLPKYQMLVTPPTASPQSPIRNIPVPVINMMQPNQQLRNT
ITNQISTNISNPMSPLTLNVGSPLYSLPSSPAISPIQRDRVLSPYSTPQSLSPAGSYQMY
SPNSNILLSPSGVMQGYDPYLTNKMQTSPGYPLQTSDMLMDSNIQLQSADFWSDSEMLQG
TSDLLTAFDDVKLV