New model in OGS2.0 | DPOGS201296  |
---|---|
Genomic Position | scaffold2162:- 9132-14961 |
See gene structure | |
CDS Length | 2037 |
Paired RNAseq reads   | 520 |
Single RNAseq reads   | 1573 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003046 (0.0) |
Best Drosophila hit   | CG17922 (2e-139) |
Best Human hit | cyclic nucleotide-gated cation channel beta-1 isoform a (4e-93) |
Best NR hit (blastp)   | PREDICTED: similar to CG17922 CG17922-PA [Tribolium castaneum] (2e-164) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC014251 [Tribolium castaneum] (3e-158) |
GeneOntology terms    | GO:0005221 intracellular cyclic nucleotide activated cation channel activity GO:0017071 intracellular cyclic nucleotide activated cation channel complex GO:0055085 transmembrane transport GO:0006811 ion transport |
InterPro families    | IPR000595 Cyclic nucleotide-binding domain IPR018488 Cyclic nucleotide-binding, conserved site IPR005821 Ion transport IPR018490 Cyclic nucleotide-binding-like IPR014710 RmlC-like jelly roll fold |
Orthology group | MCL15962 |
Nucleotide sequence:
ATGGAAATAAAAGTCGATGTGCACACCGTGCATCCAATTTCACCAGAAAAGAAGAATGAC
CGATCCAGCAAAGGACCCCACGAGTCCTGGGGTACCCCGGATACAACGCCGATCCGTAAT
GTTATAAAAAGGACCCCATCCAAACCAGAACTCTTCAATGAACTGAGGAGTAACATAAAG
GATTTAGAGCAAAACAGGAGGTCACTGTTCCCAACACAACAACTGAGATTATTCAACAAT
TCCCCCAAAAAAGTGGCTATACAGGAGTGTATTACTGAACTGGAAGAAATTCAGAGTCCT
CAAACGGAATGCGATAAAAGTTTATGCGAGGTGCCGAACAGGGCGCTTCAAGTCATAGAG
ACACCACAAAGCCCAGTACCATCGTCTCCATCAAGAGAGAAGAAATGCAAGGGCTTGAGG
TTACCGGCTTTACTGGACCCATTCGTGCCCATAGATCCACAGGGTCGAGCTTACATATCT
TGGCTTCTCCTGGTGACGTTCTGCTACAGCTACAATGCGTGGTGTGTCGCACTCCGCGCT
ACCTTCCCTTATCAGACCCTCGAGAACACTCCCATATGGATGATGGTCGACTACCTCTGC
GACGCGGTGTACATGTTGGACCTGGTGCTGGTCAAGCCACGGCTTATGTTCCTTAACGAA
GGCTTCTGGGTGGACGACCCAGTTGAGACCAGGAAGAATTACCGCAAAAAATTGCAATAC
AAGTTCGACGTGATATCGCTCCTGCCGCTGGACATATTATACATATATTACGGTCCACAA
AAAGTCATTCTCCGTCTGCCGAGGGTGCTGAAGCTGCAGACGTTTTGGGAGTTCCACCAG
GCGATGGACCGGGTTTTGTCATCCCCTTACATTGTTCGTATCGGCAAGACTCTGTTCTAT
ATCTTCTACTTGATACATCTGAACGCCTGCGCCTATTACGCCATGAGCGACTACATTGGG
CTCGCCTCCAACGGCTGGGTCTACGACAATAAGGGCAACGCTTACATACGCTGCTTCTAC
TTCGCCACCAAAACAGCGACCTCCATCGGTAAAAATCCGAAACCCGAAAACACTATGGAG
TTTCTGTACATGACGGCGGCCTGGCTCATGGGTGTGTTTGTCTTCGCTTTGCTGATAGGC
CAGATCAGGGACATCATAGCCACAGCGACCAGAGCCAGGTCAGAGTATCGTAAGACGGTG
GACGGCTGTACCCGGTACCTGCGGCGTCTGAACATGCCGCTACCGCTGCAAAGACGCGTC
ACCTGCTGGTTCACCTACACCTGGAATCAGCAGCGCTGCTTCGACGAACCCAGCATTCTG
AACTCGCTTCCTTACAATATGAAACGCGACGTGGCGCTGGAGGTCCACATCAACATACTG
AGCAAGGTGCAGCTGTTCCGCGACTGCTCGTCCTCGCTGCTCCGGGACCTGGTGCTGCAG
CTGCGCCCGGTGTCCTGCCTGCCGGGCGACGTGCTGGTGCGGCGCGGAGACGTCGGCCAC
CACATGTACATCGTCAAGTGCGGGGAGTGCTACGTGATGTCTCCGGGGGAGAACGAGGTC
CTCGCCACGCTCCGAGCCGGCTCCGTGTTCGGCGAGATCAGTCTGCTGGGGATCGACGGG
CTGCGGCGAAGAACGGCTACCGTGAGGTCCCGCGGCTACTCGAGTCTGTTCGCGCTGTCG
AGGAGCGACCTGGACGCGGCGCTGAAGTACCACAAGGAGGCGGCGCAGATACTGAGGATC
AGAGCCGACCAGATCATACGGGAGAACGCGGCCAGGCTCGCCGACAAGAGGCTGGAGCAG
AGGATGGAGGCCAAGAGGAACGAGGAGGGGAGGAGGAGGAGCCTGGCCAGCGGAGGCGGC
AGCGGAGGGGGCAAGGGCAGGAGCGGCCGCGCCAGGAGGAGACTGTCCGCCGTCTCCGAG
ACCAAGGTGGGTACACACGGTGGATACAGGGCGACGAGAGCAGACCGGGGGAGATGTGTA
ACCATGAGCGAACACCAGCAGACGCGAGCCGCGCGCGGGCTGGGCGACGACGTGTAG
Protein sequence:
MEIKVDVHTVHPISPEKKNDRSSKGPHESWGTPDTTPIRNVIKRTPSKPELFNELRSNIK
DLEQNRRSLFPTQQLRLFNNSPKKVAIQECITELEEIQSPQTECDKSLCEVPNRALQVIE
TPQSPVPSSPSREKKCKGLRLPALLDPFVPIDPQGRAYISWLLLVTFCYSYNAWCVALRA
TFPYQTLENTPIWMMVDYLCDAVYMLDLVLVKPRLMFLNEGFWVDDPVETRKNYRKKLQY
KFDVISLLPLDILYIYYGPQKVILRLPRVLKLQTFWEFHQAMDRVLSSPYIVRIGKTLFY
IFYLIHLNACAYYAMSDYIGLASNGWVYDNKGNAYIRCFYFATKTATSIGKNPKPENTME
FLYMTAAWLMGVFVFALLIGQIRDIIATATRARSEYRKTVDGCTRYLRRLNMPLPLQRRV
TCWFTYTWNQQRCFDEPSILNSLPYNMKRDVALEVHINILSKVQLFRDCSSSLLRDLVLQ
LRPVSCLPGDVLVRRGDVGHHMYIVKCGECYVMSPGENEVLATLRAGSVFGEISLLGIDG
LRRRTATVRSRGYSSLFALSRSDLDAALKYHKEAAQILRIRADQIIRENAARLADKRLEQ
RMEAKRNEEGRRRSLASGGGSGGGKGRSGRARRRLSAVSETKVGTHGGYRATRADRGRCV
TMSEHQQTRAARGLGDDV