| New model in OGS2.0 | DPOGS205888 |
|---|---|
| Genomic Position | scaffold1615:+ 16825-20646 |
| See gene structure | |
| CDS Length | 1398 |
| Paired RNAseq reads | 1080 |
| Single RNAseq reads | 2800 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007079 (0.0) |
| Best Drosophila hit | CG3011, isoform A (1e-176) |
| Best Human hit | serine hydroxymethyltransferase, cytosolic isoform 1 (4e-163) |
| Best NR hit (blastp) | serine hydroxymethyltransferase [Bombyx mori] (0.0) |
| Best NR hit (blastx) | serine hydroxymethyltransferase [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0004372 glycine hydroxymethyltransferase activity GO:0006564 L-serine biosynthetic process GO:0005739 mitochondrion GO:0030170 pyridoxal phosphate binding GO:0006544 glycine metabolic process |
| InterPro families | IPR001085 Serine hydroxymethyltransferase IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site IPR015424 Pyridoxal phosphate-dependent transferase, major domain IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
| Orthology group | MCL12766 |
Nucleotide sequence:
ATGAATAAGAGCCATTTAAATGGAGATCTGTGGGAAACAGATCCTGAACTATATGATATA
ATTAAACAAGAGAAACAAAGACAAGCTAGCGGCTTGGAAATGATTGCTTCAGAAAACTTC
ACCTCCGTAGCTGTTCTTCAATGTTTGAGCTCATGTCTTCACAACAAGTACTCTGAAGGA
ATGCCTCATCAAAGATATTACGGTGGAAATGAATTCATAGATGAAGTCGAAATTCTTGCT
CAACAGAGGTCTTTACAAGCTTACAAACTCAAGCCGGAAGAGTGGGGTGTGAATGTACAG
CCATATTCCGGATCACCTGCAAACTTTGCTGTTTATACCGGAATAGTCGAACCCCATGGC
CGCATAATGGGCTTAGACTTGCCAGATGGAGGACACCTTACACATGGTTTTTTTACAGCT
ACAAAGAAAATATCCGCCACATCCATATTCTTTGAAAGCATGCCTTATAAAGTAGATCCG
AAGAGCGGATTGATTGATTATGAACAGTTAGCTGTGAGTGTTAAGTTGTTCAAGCCGCGT
TTAATTATTGCTGGTATGAGTTGCTACTCCCGCTGTCTCGATTACAAGAGATTTAGAGAA
ATAGCTGATGAAAACGGAGCTATCTTGATGGCTGACATGGCTCATATATCAGGACTCGTA
GCAGCTGGTGTTATACCCAGTCCGTTTGAGTTCTGTGACATAGTAACAACAACAACTCAC
AAAACGTTAAGGGGTCCGCGCGCTGGAGTTATTTTCTACCGAAAGGGAGTTAAGTCTGTG
AATTCCAAAGGAGAGAAAGTTATGTATGACTATGAAAGTAAAATAAATCAAGCTGTGTTC
CCCGGCCTACAAGGTGGTCCCCACAACCATGCAATCGCTGCCATTGCCACAGCCATGAAA
CAGGCTATGTTACCTGAGTTCGTCGAATACCAACGTCAGGTTATAAACAACGCTCAAAGG
CTGTGTGAAGGTCTTAAGTCCAGAGGTTACAACATAGCCACAGGCGGTACAGATTTACAT
TTAGCACTGGTTGATGTACGTAATAAAGGTCTGTCAGGAGCAAGAGCTGAACGCATACTG
GAACTATGCAGTATAGCTTGTAACAAAAATACCGTGCCGGGAGATAAGAGTGCTCTTAAT
CCCAGCGGGATACGCCTTGGCACACCGGCACTAACTACTAGAGGTCTAAAAGAATCTGAC
TTTGATAAGGTCGTTGATTACATTGACAAAGCACTCTCATTGGCTCAAGAAATAACTAAA
TCATCTGGACCAAAACTTGTTGATTTCAACAAATTCATTGAAGATAATGCTGATATTAAA
GCAAAAATAAACAATCTCAAGGAGGAAGTAGAAAAATACAGCCAGTCATTCCCTCTACCC
GGTCTAGAAAGATTTTGA
Protein sequence:
MNKSHLNGDLWETDPELYDIIKQEKQRQASGLEMIASENFTSVAVLQCLSSCLHNKYSEG
MPHQRYYGGNEFIDEVEILAQQRSLQAYKLKPEEWGVNVQPYSGSPANFAVYTGIVEPHG
RIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDYEQLAVSVKLFKPR
LIIAGMSCYSRCLDYKRFREIADENGAILMADMAHISGLVAAGVIPSPFEFCDIVTTTTH
KTLRGPRAGVIFYRKGVKSVNSKGEKVMYDYESKINQAVFPGLQGGPHNHAIAAIATAMK
QAMLPEFVEYQRQVINNAQRLCEGLKSRGYNIATGGTDLHLALVDVRNKGLSGARAERIL
ELCSIACNKNTVPGDKSALNPSGIRLGTPALTTRGLKESDFDKVVDYIDKALSLAQEITK
SSGPKLVDFNKFIEDNADIKAKINNLKEEVEKYSQSFPLPGLERF