New model in OGS2.0 | DPOGS215939  |
---|---|
Genomic Position | scaffold720:- 13043-17763 |
See gene structure | |
CDS Length | 1767 |
Paired RNAseq reads   | 1346 |
Single RNAseq reads   | 3795 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001870 (6e-127) |
Best Drosophila hit   | Srp54 (3e-78) |
Best Human hit | splicing factor, arginine/serine-rich 12 isoform a (7e-50) |
Best NR hit (blastp)   | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (1e-109) |
Best NR hit (blastx)   | PREDICTED: similar to Srp54 CG4602-PA [Apis mellifera] (9e-93) |
GeneOntology terms    | GO:0008187 poly-pyrimidine tract binding GO:0003729 mRNA binding GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0006376 mRNA splice site selection GO:0000166 nucleotide binding GO:0005634 nucleus GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
InterPro families    | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL13431 |
Nucleotide sequence:
ATGGTTTCAAGCAGTACGAGGGTGATTCAAGTCACCAACATCGCCCCTCAAGCTACAAAA
GACCAAATGCAAACCTTATTTGGTTATTTAGGAAAAATTGATGATATAAGATTGTACCCA
ACAATAAGAGACGTATCATGTCCGGTACAGTCTCGTATATGTTACGTGAAATATTATGAT
TCGGCGACAGTCAATGTCGCCCAGCATATGACAAATACGGTGTTTATAGATCGTGCTTTA
ATCGTGATTCCCATGCAGTCAGGAGAGATTCCTGACGAGCACCGAGCTCTAGAGATGTCA
AGCAACGGAACTTTAGTGCCGGGTCTTAGTACAGTTGAACCACGATTACCAGCTCACGTG
ATCAACACTTTGGAAGGCGCACCACCCAACCAGGTCATTCAAACATACGATCCTAACATA
GCAGCAGCGGGATTACCACCGTACCCGCCGCTTCCAGCCATTTATGACTCGAGGAAAATA
GAAGAAATAAGAAGAACACTTTTACTTATAGATGTGGGCGAACTAACATCCCAACAACTC
ATTGATCATTTTTGTCAAGCTGGCGAAGTCAGCTACGTGCGATTTTGTGAACGGGAAGTT
GACAACTTAAAGTATGCGCTGATAGAAATGACAGAACAAGAAAGCATATCAAAGGCTCTT
CAGCTTAATGGAGTCGCATTAAATGGCCAAGTCATTAAGGTCCATCATTCTACGGTGGCT
ATATCAAAGCCTCAGGCTAAGAGCAATGAGGCAGCTCAAAGGGAGATCGAAGAGGCCATG
TGCAGAGTTAAGGAAGCCCAGAACTTGATATCGGCTGCCATCGACCCCGTTATTGGATTG
TTGTCTAAAGACAAAAGGACTCGTTCCCGGTCCCGGTCCCGCCGCCGCTCCCGGTCCCGG
TCTCGTCGTTCCCGGTCCCGTCACCGCTCTAAGCGATCCCGCTCACGGTCCAGACATCGC
TCCCGGAGATCACGCTCGAGGCACCGACACCGCACTAGGTCTCGTTCCCGTCACCGAAGC
TCACGGCGCTCCAGGTCCAGATCCAGACACCGCAGCTCGAGATCCAAACGAGAGAAGTCG
AAAGAACGCGATAGAAAAGACAAGAAAGACATCGGTGATAAGGAAAAGAGAGACAGTGAT
AAGACGAAGTCACCGCAGAAAGACGTGGGTAGGGACGGAAAAGACGAGCTCAAGATTGAC
ATCAGCGAGGTTGATACGAACGGCAGCTCGTATGAACATAAATCTAAAGCCTCCACACCC
GCTGATGATAAAGAAAAGACGACAGAGCTCGACAAGGACAAGTCGCCGAGGAAAAAGGAA
AGGTCCCGCTCCAAGGAAAGGAAGAGGGAACGGTCGCGGTCGAAACGAAGGTCGCGGTCA
CGATCAAGAAGGAAACGCTCGAGGTCACGTAAAAGATCGAGGTCCAGGGACAGAAAGAAA
TCCCGCTCCAGAGAGAGGAAGAAGTCGAGGTCGCGGGACAGAAAACGGTCCAGGTCCAGG
GACAGGAAGCGGACGAAGTCGAGGGAGAGGAAGAGGTCGCGGTCCAAAGATAGGAAAAGA
TCGCGCTCCAAGGATAGGAAGCGTTCGCGGTCACCCAGCAGGCGCTCCAAGAGCCGGTCC
CATAGAGATTCCAAAACGCCTCACGAGAGGAAGTCACGTGACCACTCGCCGCTACCAGCA
ATAATGGAAAAGACTCCACACAAAACTATAGACGTGACAGATGAAAAGAATTCCCCAGAC
AATATGGACATTTCAAATTCCCCATAA
Protein sequence:
MVSSSTRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYD
SATVNVAQHMTNTVFIDRALIVIPMQSGEIPDEHRALEMSSNGTLVPGLSTVEPRLPAHV
INTLEGAPPNQVIQTYDPNIAAAGLPPYPPLPAIYDSRKIEEIRRTLLLIDVGELTSQQL
IDHFCQAGEVSYVRFCEREVDNLKYALIEMTEQESISKALQLNGVALNGQVIKVHHSTVA
ISKPQAKSNEAAQREIEEAMCRVKEAQNLISAAIDPVIGLLSKDKRTRSRSRSRRRSRSR
SRRSRSRHRSKRSRSRSRHRSRRSRSRHRHRTRSRSRHRSSRRSRSRSRHRSSRSKREKS
KERDRKDKKDIGDKEKRDSDKTKSPQKDVGRDGKDELKIDISEVDTNGSSYEHKSKASTP
ADDKEKTTELDKDKSPRKKERSRSKERKRERSRSKRRSRSRSRRKRSRSRKRSRSRDRKK
SRSRERKKSRSRDRKRSRSRDRKRTKSRERKRSRSKDRKRSRSKDRKRSRSPSRRSKSRS
HRDSKTPHERKSRDHSPLPAIMEKTPHKTIDVTDEKNSPDNMDISNSP