| New model in OGS2.0 | DPOGS201608 |
|---|---|
| Genomic Position | scaffold1498:+ 100342-101092 |
| See gene structure | |
| CDS Length | 567 |
| Paired RNAseq reads | 408 |
| Single RNAseq reads | 1047 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012200 (3e-79) |
| Best Drosophila hit | mitochondrial ribosomal protein L43 (3e-59) |
| Best Human hit | 39S ribosomal protein L43, mitochondrial isoform a (5e-24) |
| Best NR hit (blastp) | GH20346 [Drosophila grimshawi] (2e-63) |
| Best NR hit (blastx) | GH20346 [Drosophila grimshawi] (3e-62) |
| GeneOntology terms | GO:0003735 structural constituent of ribosome GO:0005762 mitochondrial large ribosomal subunit GO:0006412 translation |
| InterPro families | IPR007741 Ribosomal protein/NADH dehydrogenase domain IPR012336 Thioredoxin-like fold |
| Orthology group | MCL11780 |
Nucleotide sequence:
ATGTCTAATAGCAATTTATTTCTGAAATCCGGATTCGTTCGAGCACCATTGCAGAATGGT
GTCGGTCGTTATGTTTGTCAATTGCAGAGGATTGTTTTAAAATTCTGCAAAAGTCACGGC
GGGAGCCGAGGAATGAGAGATTTTATTGAACAGGATTTAGTCGATTTCGCAAGAGACAAT
CCCAGTGTAGTGGTTTACTTGAAGCCGCGAAGACATCGGAGTCCAGTCGTTGTAGCCGAG
TATCTAAATGGCGATAGAGTTTGGATGAGTATGCAAAACAAAACACACTCGGAGATCACA
AAATGGATTGAGAACATGAGAACACAGCAGGGAGACTTATCTGCGCTGCGACTCAGGAAA
TATCAATACACCGATCACCCATCCATCCAGGGTCCGTGGACACCGTTCACATTCAAGAAT
CCTGAACTCAACGTAGCCACATTACCCGATCCCAAATTCGGTGCAAACAATAGATTACCA
ATGTCAGCGACGGAACAGCTTAGAATGATGTTCGAAAAACAAAGCATCGGTAGCAAAGAA
GACACAGAAGAAAAAAAGGCGGAATAA
Protein sequence:
MSNSNLFLKSGFVRAPLQNGVGRYVCQLQRIVLKFCKSHGGSRGMRDFIEQDLVDFARDN
PSVVVYLKPRRHRSPVVVAEYLNGDRVWMSMQNKTHSEITKWIENMRTQQGDLSALRLRK
YQYTDHPSIQGPWTPFTFKNPELNVATLPDPKFGANNRLPMSATEQLRMMFEKQSIGSKE
DTEEKKAE