| New model in OGS2.0 | DPOGS207534 |
|---|---|
| Genomic Position | scaffold615:+ 46689-49675 |
| See gene structure | |
| CDS Length | 633 |
| Paired RNAseq reads | 255 |
| Single RNAseq reads | 744 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001898 (7e-88) |
| Best Drosophila hit | Rpb5 (1e-109) |
| Best Human hit | DNA-directed RNA polymerases I, II, and III subunit RPABC1 (1e-96) |
| Best NR hit (blastp) | AGAP010064-PA [Anopheles gambiae str. PEST] (3e-116) |
| Best NR hit (blastx) | AGAP010064-PA [Anopheles gambiae str. PEST] (1e-111) |
| GeneOntology terms | GO:0005665 DNA-directed RNA polymerase II, core complex GO:0003899 DNA-directed RNA polymerase activity GO:0006366 transcription from RNA polymerase II promoter GO:0003677 DNA binding |
| InterPro families | IPR000783 RNA polymerase, subunit H/Rpb5 C-terminal IPR005571 RNA polymerase, Rpb5, N-terminal IPR020608 RNA polymerase, subunit H/Rpb5, conserved site IPR014381 DNA-directed RNA polymerase, RPB5 subunit |
| Orthology group | MCL13475 |
Nucleotide sequence:
ATGGATGACGACGCCGAAACTTATAAACTGTGGCGTATTCGCAAAACTGTCATGCAGTTA
TGTCATGACCGTGGCTATTTGGTCACTCAGGATGAATTGGATCAAACATTAGACCAGTTT
AAAGAACAATTTGGTGATAAACCAAGTGACAAGCGGCCAGCGAGAAGTGATCTTATAGTG
CTTGTAGCCCACAACGATGATCCAACAGACCAAATGTTTGTGTTCTTTCCTGATGAAGCT
AAAATTGGTATCAAAACTATCAAAACTTACTGTACAAGAATGCAGGAAGAGAACATACAT
AGAGCAATTGTAGTTGTTCAAGCAGGAATGACGCCATCTGCGAAACAGTCTCTAGTGGAT
ATGGCTCCGAAGTATATTTTGGAACATTTCCTGGAATCCGAGCTTTTAATCAATATAACA
GAACATGAATTGGTCCCAGAACATATTGTATTGACACCTGATGAGAAGCAAGAGTTATTG
GCTAGATATAAATTAAAAGAGAACATGTTAATGAGAATACAGGCAGGGGATCCAGTGGCG
AGATATTTTGGCCTGAAGAGAGGACAGGTCGTCAAAATTATAAGATCATCGGAAACGGCT
GGGAGATATATATCATATAGATTAGTTTGTTAG
Protein sequence:
MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIV
LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVD
MAPKYILEHFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA
RYFGLKRGQVVKIIRSSETAGRYISYRLVC