| New model in OGS2.0 | DPOGS211664 |
|---|---|
| Genomic Position | scaffold1662:+ 19730-25973 |
| See gene structure | |
| CDS Length | 2346 |
| Paired RNAseq reads | 541 |
| Single RNAseq reads | 1333 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001364 (0.0) |
| Best Drosophila hit | CG3338 (0.0) |
| Best Human hit | vacuolar protein sorting-associated protein 53 homolog isoform 1 (3e-177) |
| Best NR hit (blastp) | PREDICTED: similar to CG3338 CG3338-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG3338 CG3338-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005768 endosome GO:0010008 endosome membrane GO:0005794 Golgi apparatus GO:0016020 membrane GO:0015031 protein transport |
| InterPro families | IPR007234 Vps53-like, N-terminal |
| Orthology group | MCL12183 |
Nucleotide sequence:
ATGGATTCCACTGAGGTATTAGAAGACAAGGATAGCGGTCCTGAGGTCCAGCTTAATTTA
CCCGGTTCTGTTATGAGCCGAATAGAAGAATTAATGGGAGGAACGGAACAATTCGATAGT
GAAGAATTTGACGCTGTGGCCTACATCAACCGTGTATTCCCTACTGAACAGTCGCTCTCA
GGAGTAGAGTCAGCAGCAGCTCGCTGCGAGTTTCGTCTAGCCAGTGTGCAGCATGACATT
CGAAGGCTGGTCCGAGCCCAGCATGATCAGCGAATGGCCGGACATGAAGCATTGCTCGAT
GCTCAGAAATGTATTGCTGAACTGGCTTTACAGGTCGCAGATATAAACAAAAAAGCTGAA
CGCAGTGAAAGCATGGTCCGCGAAATAACATCGGAGATCAAACAACTAGACTGCGCCAAG
TGGAACCTTACCGGAGCTATCACAGCCTTGAACCATCTCCATATGCTAGCTGGTGGAGCC
GCGTCTCTCAGGACCTTGGCTGATAATAGACGTTACAAGGAACTAGTGTTGCCACTGCAA
GCTATAATGGAGGTGCTAGATCAGCTTCAATGCTACCGGGATATTAAAGAGCTGAACGCC
TTGAGGGAGGAGGTGCTCGGCATCAGGACGATGCTGGCTCAGCAGATACTAGCCGACTTC
AAAGAAGCCCTCACTGGTGGTGGTAAGAGTGGCGTGTCTCCCCGGATGCTGGCGGAGGCG
TGTAGTGTGGTGGACGTGCTGGAACCTTCCGTCAGGAAAGAACTGCTCAAATGGTTTATA
GATATGCAGCTACAGGAGTACGAGCACCTGTTCTCTCCTGAGCAGGAACACGCGTGGGTG
TCTCACGTGGAGCGCCGCTACACCTGGCTGAAGAAACACTTGCTGCGGTTCGAGGAGACC
CTCGCGCTCACCTTCCCCCCGGCCTGGAGGATGAGCGAACGCCTGGCGCATCGGTTCTGT
AAGCTCACACACAAGGCTCTGAGTGATCTGCTACAGGCTCGGCGGAACGAGCTGGATGTC
AAACTGCTATTGTACGCCATACAGAAGACTTACAACTTTGAAGTGTTGCTGCACAAGAGA
TTTATAGGTACCGATGTCGGTGCTGATGCAGCGGACCTGTCCCCCGAGCATCAGCTGGTG
TTTGATGACGAAGAGACGGGTGCTGTCCTCCGTCAAGGCTCCCCGTGGGTCGGTCTGATA
GGATCGTGTTTCGAGTGCCACCTGTCGCTGTACATCACCAGCCTGGACGCCAACCTCCGA
GGGCTTATGGACAGGTTCATACAGGACGCCAAGAGTCCAGATAGCGTCACGAGCGCGGTG
GGCAGCGGCGCCGGAGCGGTGATGTCCTCGTGCGCTGACCTGTTCCTCTTCTACAAGAAG
TGTCTCGCCCAGTGCGCCACGCTCTCCACCGGGGAGCCCATGCTAGAGCTGTCGATGGTG
TTCTCGTCATATCTCCGCGAGTACGCCGGCAGCGTGTTGTCGGCCGCGCTGCCCAGGGCC
GCCCCCGCCCTGCCCGCCCTCGTCACCGGCCTCCACACCCTGCTCAGAGACGACGCTGTC
AGGTACACGAAGCAGGAGATCACTAAAATAACGAGCGTCATCACCACGTCCGAGTACTGT
CTGGAGACGACTGTACACCTGGAACAGAAATTAAAGGAGAAGATCTCACCCTCGCTGGTC
GAGAGGATAGACCTGGCGCCCGAGCAAGACCTGTTCCACAAGATGATCAGCAACTGCATC
CAGCTGTTGGTCCAAGACCTGGAAATGGCCTGCGAGCCGGCCCTCCAGGCGATGACTAAA
ATATCCTGGCTGCATTTCGACAACGTAGGCGACCAGAGCTCCTACGTCACACAGATCATC
ATGCACCTCAAGAACACGGTCCCCAACCTGCGGGACAACCTCGCGTCCTCGAGGAAGTAC
TTCACGCAGTTCTGCATCAGGTTCGCGAACTCCTTCATACCGAAGTTTATCCAGAACATA
TACAAGTGCAAGCCGATCTCGACCGTGGGCTCCGAGCAGTTACTCCTGGACACGCACATG
TTGAAGACGGCGCTGTTGGAGCTGCCGTCCATTGGGTCGGAGGTGAAGCGGCAGGCGCCC
ACCACCTACACCAAGGTCGTCATAAAGCTGATGACGAAAGCGGAAATGATACTGAAGCTG
GTGATGGCGCCGCTGGACGGTAACTTGGAAGGATTCGTCTCCCAGTTCGTCCAACTGCTG
CCGGAGAGTACCTTGGTGGAGTTCCACAAGGTCCTGGACATGAAGGGAGCCAAACTGACC
AAGACACAGCAGAGCTCTCTGGACGCTCTGTTCAAAGAGACCGCTAAGACTGTACAAAAT
AAATAA
Protein sequence:
MDSTEVLEDKDSGPEVQLNLPGSVMSRIEELMGGTEQFDSEEFDAVAYINRVFPTEQSLS
GVESAAARCEFRLASVQHDIRRLVRAQHDQRMAGHEALLDAQKCIAELALQVADINKKAE
RSESMVREITSEIKQLDCAKWNLTGAITALNHLHMLAGGAASLRTLADNRRYKELVLPLQ
AIMEVLDQLQCYRDIKELNALREEVLGIRTMLAQQILADFKEALTGGGKSGVSPRMLAEA
CSVVDVLEPSVRKELLKWFIDMQLQEYEHLFSPEQEHAWVSHVERRYTWLKKHLLRFEET
LALTFPPAWRMSERLAHRFCKLTHKALSDLLQARRNELDVKLLLYAIQKTYNFEVLLHKR
FIGTDVGADAADLSPEHQLVFDDEETGAVLRQGSPWVGLIGSCFECHLSLYITSLDANLR
GLMDRFIQDAKSPDSVTSAVGSGAGAVMSSCADLFLFYKKCLAQCATLSTGEPMLELSMV
FSSYLREYAGSVLSAALPRAAPALPALVTGLHTLLRDDAVRYTKQEITKITSVITTSEYC
LETTVHLEQKLKEKISPSLVERIDLAPEQDLFHKMISNCIQLLVQDLEMACEPALQAMTK
ISWLHFDNVGDQSSYVTQIIMHLKNTVPNLRDNLASSRKYFTQFCIRFANSFIPKFIQNI
YKCKPISTVGSEQLLLDTHMLKTALLELPSIGSEVKRQAPTTYTKVVIKLMTKAEMILKL
VMAPLDGNLEGFVSQFVQLLPESTLVEFHKVLDMKGAKLTKTQQSSLDALFKETAKTVQN
K