New model in OGS2.0 | DPOGS207615  |
---|---|
Genomic Position | scaffold4365:+ 2244-4958 |
See gene structure | |
CDS Length | 1209 |
Paired RNAseq reads   | 576 |
Single RNAseq reads   | 1866 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006357 (5e-64) |
Best Drosophila hit   | pitchoune, isoform A (3e-79) |
Best Human hit | ATP-dependent RNA helicase DDX18 (2e-76) |
Best NR hit (blastp)   | PREDICTED: similar to RE48840p [Nasonia vitripennis] (3e-96) |
Best NR hit (blastx)   | DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] (3e-88) |
GeneOntology terms    | GO:0004004 ATP-dependent RNA helicase activity GO:0003724 RNA helicase activity GO:0005634 nucleus GO:0005730 nucleolus GO:0003676 nucleic acid binding GO:0005524 ATP binding |
InterPro families    | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
Orthology group | ND |
Nucleotide sequence:
ATGCCGACTCCGGACAAAATATTGATGAGGAAAATTAAAAAACGGGAAAAGAAAAAATTA
AAACTAATATCCAAAAAAGCCAATGCCGATCCGGACACCACAGAAAAAGCTAAAGGTGAC
GACTGTACTGAAAAAGAATTAAAGAGGCCCTCTGATAATAAGGAACAAAGCAATGGCGTA
ACCTCAAAAAAAAAGAAAAAGAAGCCTAAAGTTGAAGAAAAAATAGAGTCAGAGGAAATA
AAAGATGAACCAGATACAGATGGTGAGATGGATGAAGGTGGCCAAGAAGATGTTGAAAAC
AATGAAATTAAAACCAATGAGGAAAGTCAATTGCCAGGCTCCAGTTTATGTCTTGGAATT
TTGTCTGACCAGAAATTCACAGCACTTGAAGGAAAAATATGTGAAGCTACACTCATGGGT
ATCAAGGATATGGGTTTCACAACTATGACTGAGATACAAGCTAAGGCTATTCCACCGTTA
TTAGAAGGGAGAGATCTCGTTGGAGCAGCTAGAACCGGCTCAGGAAAAACGTTAGCCTTT
CTTATACCAGCTATTGATTTGATCTACAAATTGAAATTTAAACCTAGGAATGGTACTGGT
GTCATTATTTTGTCTCCAACTAGAGAGTTGTCAATGCAAACTTTTGGTGTTTTGATGGAA
TTGATGAAATACCATCATCACACTTACGGATTGGTCATGGGTGGCGCTAACAGAAGTACA
GAGGCACAGAAGCTTTCCAAAGGTATTAATATTCTGGTAGCAACACCTGGCAGGCTTTTA
GATCACCTACAAAACACACCAGACTTTTTGTACAAAAATTTACAGTGCCTTGTCATTGAT
GAAGCCGACCGAATACTTGAAATTGGATTTGAAGAGGAAGTTAAACAAATAATAAGATTA
TTGCCAACGACTATGGTAGCTGAATATCCACACGGCATTGAAGGGTTGGCGTTTATGGCG
AATATCCTTCCGTCGGGGAGTCGGTACATTTTGTTTGATGATAGCGTCTGCGGGTCCACC
CTGAACTTGAGTCCGCCTGTTGCCGCATTGACTGTGACGTCATTCTCAGTCATCTGTATA
ATATTTTCGGGTGAGAGGTCCGGCAGTGAACTTGACTGGCGGACGACAGGTGTGACCTTG
GGCGCCGCCACAGGTCCGGGTGTCATACACTGGACGTCATCATCGCCGGTGTCTTCAGTC
ACCTGCTAA
Protein sequence:
MPTPDKILMRKIKKREKKKLKLISKKANADPDTTEKAKGDDCTEKELKRPSDNKEQSNGV
TSKKKKKKPKVEEKIESEEIKDEPDTDGEMDEGGQEDVENNEIKTNEESQLPGSSLCLGI
LSDQKFTALEGKICEATLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAARTGSGKTLAF
LIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRST
EAQKLSKGINILVATPGRLLDHLQNTPDFLYKNLQCLVIDEADRILEIGFEEEVKQIIRL
LPTTMVAEYPHGIEGLAFMANILPSGSRYILFDDSVCGSTLNLSPPVAALTVTSFSVICI
IFSGERSGSELDWRTTGVTLGAATGPGVIHWTSSSPVSSVTC