| New model in OGS2.0 | DPOGS213697 |
|---|---|
| Genomic Position | scaffold487:+ 25009-38948 |
| See gene structure | |
| CDS Length | 3351 |
| Paired RNAseq reads | 2070 |
| Single RNAseq reads | 5769 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010670 (0.0) |
| Best Drosophila hit | CG3542, isoform B (4e-141) |
| Best Human hit | pre-mRNA-processing factor 40 homolog A (2e-76) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC015831 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC015831 [Tribolium castaneum] (3e-169) |
| GeneOntology terms | GO:0017058 FH1 domain binding GO:0005685 U1 snRNP GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR010989 t-SNARE IPR002713 FF domain IPR001202 WW/Rsp5/WWP IPR000727 Target SNARE coiled-coil domain |
| Orthology group | MCL11755 |
Nucleotide sequence:
ATGCTCCCTCGTCGTCGAAACGTCGGAGTGTCGGATAAGACACCTCTTTTACAAGAAGAA
TTGATACCCTACGATAAACTCAACAAAAACGGACACATTTACCAGCCAACATTTTCTGAT
AAGCAGCAAGAGAACTACTCGGTACCAGATACTTCGTTCGACTTTCTTGAGGAATTTGTA
TTTGAAGCAGTGATGGCTGCTAGAGATAGGACTCAAGAATTTGCGTCAACAGTTAGAAGT
CTCCAAGGTCGAACGTTTGCTCGGCCTATAATAAAAGATGAAAAAAAAGCTGCAATGCTC
GCAACATATTCTCAATTTATGAGTATGGCAAAAGTTATAAGTAAAAACATAACAAGTACC
TACACCAAACTTGAAAAGCTTGCCTTGTTGGCAAAAAAGAAGTCTCTATTCGACGATCGG
CCTATGGAAATCCATGAGCTAACATATATAGGAGAAATGCCTAGAGGACGGAGGAGCATG
CATAGCCATTCCTCTAGTGTAGTCCTAGCACTACAATCAAGACTTGCATCTATGAGTAAC
CAGTTTAAACAGGTACTTGAAGTAAGGTCTGAAAATCTTAAGCATCAAAATAATAGACGC
ACACAATTTTCTGCATCTGCTCCAGTGGTCAAAGAAGTTCCATCTTTATTGCAACCAGAT
GAAGTTAGTATAGATTTAGGGGACACCTCTCCTCTTCAAAGCCAACAATTAGCACTAAGG
GATGATACGGATTCCTATGTGCAACAAAGAGCGGAGACTATGCATAACATTGAGAGTACT
ATTGTAGAGTTGGGTGGGATTTTCCAACAATTGGCTCACATGGTCAAAGAACAGGATGAG
GCTATAGGCAGAATAGATGCCAACATCCAAGAAGCTGAAATGAATGTTGAAGCTGGCCAT
AGAGAAATAATGAAATATTTCCAAAATATAACAGGAAATAGAGCACTCATGTTTAAAGAT
ACTCCTGGCTCTGGTACTAGTTCACCAGGCCTTATGAGCACTGGGCCTTTGCTCCCGCCG
CCGATGCTCGGCGGATTGCCGCCTCCCATGCCGCCCGCGGTAGCGATGCCGCCGGTTCCC
GGCATGCCACCGAATATGCCACTTCCTCCGCCGATGGGTTTTCCACCTATGATGGCACCA
TTTTCAATGCCTCCACCAGGATTTCCACCTTTTAAACCAGAGTTAAGTGCACCAGCACCA
GAATTATCGCCCATGGTGAATCAGAATTCCCCATGGACTGAACACAAAGCACCAGATGGA
CGTACTTACTATTACAATTCCATAACAAAACAGAGTCTTTGGGAAAAACCAGATGATTTG
AAAACCCCCGCTGAAAAACTTTTGTCGTCGTGTGTATGGAAAGAATATACCACAGATGCT
GGCCGAGTCTACTATCATAATATTGAAACAAAGGAATCTAGTTGGGTTATCCCAAAGGAA
CTTCAAGAGATAAAAGACAAAATAGCCGCTGAAGAAGCAGCACATGCTATAATGAATGCC
GAGGTACCGCCAGGTGAAGTACCTCTGCCAATGTCACCTGCCATTAACAGTACATCCGCT
TTAGATGAAGCTATGGCCAAGACACTAGCATCTATAGACCCCGGTCTTACGACATCTATA
CCTATCCCAGAGGAAATAAAGCCTGAGGAAATAGCCGCCCCACCACAACCAAATGGAGCT
GATGCTGAACCAACTCCTGAAACACTGTACAAAGACAAGAAGGAAGCCATAGAGGCCTTC
AAGGAGCTGCTCAAAGAAAGGAATGTACCTTCCAATGCTACATGGGAGCAATGCGTCAAG
ATTATATCAAAAGATCCGAGATATGTCACGTTCAAGAAATTAAATGAAAAGAAACAGGCG
TTCAATGCCTACAAGACACAGAAACTTAAAGACGAGAGGGAGGAGCAGAGATTAAAAACA
AAAAAGAATCGGGAGAATTTGGAGGAGTTCTTATTGAGTTGCGATCGTGTGACGTCACTC
ACTAAGTATTATAAGTGCGAGGAAATGTTTAATAATCTAGAGATATGGCGATGTGTTCCT
GACTCGGACAGAAGAGACATTTATGAAGACTGCATCTTCACGATAGCGAAACGCGAAAAA
GAGGAGGCCAAGGCATTGAAGAAACGGAATATGAAAATTTTATCTCAAGTCTTAGAAAAC
ATGAATGAAATAAGTTACAACAGTACTTGGAGTGAAGCTCAAGTATTACTACTCGAGAAT
GCTGCTTTTAAGAATGACGTCAGTCTACTGGGTATGGACAAAGAGGACGCTTTAATAGCT
GTGGGCAACTACAGCTCAAACATGGGCTGGCTCGACCGGGAAAGTACCACCCTCTCACAG
GAGGCACTATTGGACGGTCTGCACGAAGAAGGGAAGTTGACTTCTATGTCTCTGTGGGTC
GAACTGTATCCAGTCATATCAGCTGATACACGATTTTCGGCTATGCTCGGACAAAACGGC
TCAACACCTCTGGACCTGTTCAAGTTCTATGTGGAGAACCTCAAGGCGAGGTTCCACGAC
GAGAAGAAAATCATCAAGGAGATCCTGAAAGAGAAAGAGTTTGAAGTCAAGCCGACCACC
ACCTTCGAGGAATTCGCCACCGTCGTGTGCGAGGACAGCAAGTCGGCGTCGCTGGACGCC
GGGAACGTTAAGCTCACGTACAATTCGTTACTTGAAAAGGCCGAAGCGAAGAACAAGGAG
AAATTGAAAGAGGAATCAAAAGCTCAGAAGAAAATCGAGAGCGCGTTCAAGTGGTTGTTA
AGCGAGGCTCGACTGGACCCGGCGCTGTCGTGGGCCGAGGCGAAGGAGAAGATAGATCTG
AACGCACCAGAGATAGTGGCCGTGCAGGACGAGAACGAACGTGAGCGGATATACATGGAC
TATCAACACGAGCAGGAGGAGAGCTGTATGCATTACCATCATCCCAAGCCGAGAAAATCG
AAGAAATCCAAAAAGAAGAAGCAACGGTCAAGATCGCCGTCTATCGTGAGCTTGAAGCCG
TCTCGTTCCCGTTCCGTGTCCGAGACTCGTCTGTCCTCCGGGACCGCCTCGCCCTCGGAC
GAGGAACGTAAGAACAAGAAGACTAAAAAGAAACATCGCAAGCATTCGCCGCCGAAATCT
CCTACGCCTGAGGAGGGAGGTATCACAGACGAGGAACCAGCGAAGCACAGGAGTAAGAAA
ACCAAAAGGAGCGCTCCCAGCTCACCCGACCAGCCCGAACCGCCCCACAGACCCAAGAAG
AAAAAAGAGAAACGGGACAAGAAGGACAGAGACCGACCCGCTCATCGTCAAGCGGCGGAA
TACTCCTCGTCAATTAATTCTCAGATGAGTAAGAAACGTCCTAAGGCCTAA
Protein sequence:
MLPRRRNVGVSDKTPLLQEELIPYDKLNKNGHIYQPTFSDKQQENYSVPDTSFDFLEEFV
FEAVMAARDRTQEFASTVRSLQGRTFARPIIKDEKKAAMLATYSQFMSMAKVISKNITST
YTKLEKLALLAKKKSLFDDRPMEIHELTYIGEMPRGRRSMHSHSSSVVLALQSRLASMSN
QFKQVLEVRSENLKHQNNRRTQFSASAPVVKEVPSLLQPDEVSIDLGDTSPLQSQQLALR
DDTDSYVQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRIDANIQEAEMNVEAGH
REIMKYFQNITGNRALMFKDTPGSGTSSPGLMSTGPLLPPPMLGGLPPPMPPAVAMPPVP
GMPPNMPLPPPMGFPPMMAPFSMPPPGFPPFKPELSAPAPELSPMVNQNSPWTEHKAPDG
RTYYYNSITKQSLWEKPDDLKTPAEKLLSSCVWKEYTTDAGRVYYHNIETKESSWVIPKE
LQEIKDKIAAEEAAHAIMNAEVPPGEVPLPMSPAINSTSALDEAMAKTLASIDPGLTTSI
PIPEEIKPEEIAAPPQPNGADAEPTPETLYKDKKEAIEAFKELLKERNVPSNATWEQCVK
IISKDPRYVTFKKLNEKKQAFNAYKTQKLKDEREEQRLKTKKNRENLEEFLLSCDRVTSL
TKYYKCEEMFNNLEIWRCVPDSDRRDIYEDCIFTIAKREKEEAKALKKRNMKILSQVLEN
MNEISYNSTWSEAQVLLLENAAFKNDVSLLGMDKEDALIAVGNYSSNMGWLDRESTTLSQ
EALLDGLHEEGKLTSMSLWVELYPVISADTRFSAMLGQNGSTPLDLFKFYVENLKARFHD
EKKIIKEILKEKEFEVKPTTTFEEFATVVCEDSKSASLDAGNVKLTYNSLLEKAEAKNKE
KLKEESKAQKKIESAFKWLLSEARLDPALSWAEAKEKIDLNAPEIVAVQDENERERIYMD
YQHEQEESCMHYHHPKPRKSKKSKKKKQRSRSPSIVSLKPSRSRSVSETRLSSGTASPSD
EERKNKKTKKKHRKHSPPKSPTPEEGGITDEEPAKHRSKKTKRSAPSSPDQPEPPHRPKK
KKEKRDKKDRDRPAHRQAAEYSSSINSQMSKKRPKA