New model in OGS2.0 | DPOGS204923  |
---|---|
Genomic Position | scaffold5819:+ 252-7620 |
See gene structure | |
CDS Length | 1800 |
Paired RNAseq reads   | 1563 |
Single RNAseq reads   | 5387 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010725 (0.0) |
Best Drosophila hit   | alpha-coatomer protein, isoform A (0.0) |
Best Human hit | coatomer subunit alpha isoform 2 (0.0) |
Best NR hit (blastp)   | coatomer protein complex subunit alpha [Bombyx mori] (0.0) |
Best NR hit (blastx)   | coatomer protein complex subunit alpha [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0006890 retrograde vesicle-mediated transport, Golgi to ER GO:0030126 COPI vesicle coat GO:0016192 vesicle-mediated transport GO:0005515 protein binding GO:0005198 structural molecule activity GO:0006886 intracellular protein transport GO:0006911 phagocytosis, engulfment GO:0010883 regulation of lipid storage |
InterPro families    | IPR011046 WD40 repeat-like-containing domain IPR020472 G-protein beta WD-40 repeat IPR006692 Coatomer, WD associated region IPR019781 WD40 repeat, subgroup IPR001680 WD40 repeat IPR015943 WD40/YVTN repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR019775 WD40 repeat, conserved site |
Orthology group | MCL12146 |
Nucleotide sequence:
ATGTGTGCACAGTTTCATCCCACCGAAGATCTTCTAGTGTCAGCTTCGTTGGACCAATCT
GTTAGAGTCTGGGACTTCTCTGGGCTGAGGAAGAAGAGTGTGGCACCGGGACCCACAGGG
CTAGCCGATCATCTCAGGAATCCACAAGCTACGGACCTCTTTGGACAGGCGGATGCAGTT
GTAAAGCATGTGTTGGAAGGGCATGATCGCGGAGTGAACTGGGCGTCTTTCCATCCAAAC
CTCCCGCTCATAGTGTCCGCAGCTGATGATAGACAAGTCAAACTGTGGCGGATGAACGAT
GCCAAGGCTTGGGAGGTAGACACGTGTCGCGGGCACTACAACAACGTGTCATGTGCGCTG
TTCCACGCTAGACACGAGCTGATACTGTCGAATAGTGAGGATAAATCCATCAGGGTCTGG
GATATGACGAAGCGTGTCTGTTTGCACACCTTCAGGAGAGAACACGAACGCTATTGGGTG
CTATCATCACATCCGACCCTCAACCTATTTGCCGCTGGTCACGACGCTGGTATGATATTG
TTCAAACTTCAACGAGAAAGACCAGCATATGCCATACATAATAATATGCTCTTCTATATT
AAGGACAGACAGCTTCGTAAACTGGATATGTCAACTAATAGAGATGCCCCGGTTATGCAG
ATCAAGGGTGGCGGAAGACATCAACCTTACAGTATGTCGCTGAATCACGCTGAGTGGTGC
GTGCTTGTGTCGTGGCGTGTTGGTGACACGCATACGTACGAACTATACAACGTTTCGAGA
GACGGTGAGGCTGCGAGTACCGCTGAGCCAATGAGGGGACACGCTACTACGGCTGTGTGG
GTCGCTAGGAATAGATTTGCTGTATTGGAGAAGAACAATCAGCTGATAATAAAGAATCTG
AAGAACGAGGTGTCCAAGAAGATAGCGACTCCGACGTGTGAGGAGATCATGTACGCCGGT
ACTGGGATGCTGTTACTCAGGGAGGTCGATGCTGTGCAGCTCCTGGACGTGCAGCAGAAG
AGGACCGTGGCCAGTGTGAAAGTATCCAAATGCCGTTACGCTATTTGGAACTCGGATATG
TCGCTAGTGGCGCTCCTTGGGAAGCATACGGTGACGATATGTACCAAGAAGCTAGAACAG
CTGTGCTCTATCACCGAAGGGGCGCGGGTCAAGTCGGGGGCGTTTGATGATTCAAATTCA
CACCCAGTCTTCATATACACGACGGCCAATCACATCAAATATTGCTGCAAAGAAGGAGAT
CACGGGATTATCCGTACGTTGGATGTGCCGGTGTATGCGGTGAAGGTGATAGCGAACGAA
GCTGGGGCGAGAGTTGTATGTCTCGATAGAGAGGCCCGTCCCAAAGTACTCAACATTGAC
CCCACAGAATACAGAGTTTTGAAGAAAACAGAAGAATGCTATCCAGAAGTAGCGCTTCAC
TTCGTGAAGGATGCCCGGACGAGGTTGGAATTGTCACTACAGTGTGGTAACATAGAAGTG
GCTTTGGAAGCTGCTAAGAGTTTGGACGATCCTGATGCATGGGAGAAACTCGCTGATGCG
GCGAGAAACGCCGGAAACCATCAGATTGTTGAGATGTGCTACCAGCGTACAAAGAACTTT
GACAAGCTCTCGTTCCTGTACCTCATCACCGGCAACCTTGACAAGTTGAGGAAGATGATG
AAAATAGCGGAGATAAGAAAAGATGTCTCCTCACAGTTCCAAGGAGCGCTGCTGTTAGGA
GATGTGGCTGAGAGAATAAGGCTGTTGAAAAACGCTGGACAGGTCTATGGAACTAAATAA
Protein sequence:
MCAQFHPTEDLLVSASLDQSVRVWDFSGLRKKSVAPGPTGLADHLRNPQATDLFGQADAV
VKHVLEGHDRGVNWASFHPNLPLIVSAADDRQVKLWRMNDAKAWEVDTCRGHYNNVSCAL
FHARHELILSNSEDKSIRVWDMTKRVCLHTFRREHERYWVLSSHPTLNLFAAGHDAGMIL
FKLQRERPAYAIHNNMLFYIKDRQLRKLDMSTNRDAPVMQIKGGGRHQPYSMSLNHAEWC
VLVSWRVGDTHTYELYNVSRDGEAASTAEPMRGHATTAVWVARNRFAVLEKNNQLIIKNL
KNEVSKKIATPTCEEIMYAGTGMLLLREVDAVQLLDVQQKRTVASVKVSKCRYAIWNSDM
SLVALLGKHTVTICTKKLEQLCSITEGARVKSGAFDDSNSHPVFIYTTANHIKYCCKEGD
HGIIRTLDVPVYAVKVIANEAGARVVCLDREARPKVLNIDPTEYRVLKKTEECYPEVALH
FVKDARTRLELSLQCGNIEVALEAAKSLDDPDAWEKLADAARNAGNHQIVEMCYQRTKNF
DKLSFLYLITGNLDKLRKMMKIAEIRKDVSSQFQGALLLGDVAERIRLLKNAGQVYGTK