| New model in OGS2.0 | DPOGS207608 |
|---|---|
| Genomic Position | scaffold240:- 208174-210727 |
| See gene structure | |
| CDS Length | 951 |
| Paired RNAseq reads | 65 |
| Single RNAseq reads | 183 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006524 (2e-48) |
| Best Drosophila hit | pitchoune, isoform A (3e-56) |
| Best Human hit | ATP-dependent RNA helicase DDX18 (7e-57) |
| Best NR hit (blastp) | DEAD box helicase [Ectocarpus siliculosus] (9e-69) |
| Best NR hit (blastx) | AGAP008601-PA [Anopheles gambiae str. PEST] (1e-62) |
| GeneOntology terms | GO:0016787 hydrolase activity GO:0004386 helicase activity GO:0000166 nucleotide binding GO:0005524 ATP binding GO:0003723 RNA binding GO:0008026 ATP-dependent helicase activity GO:0003676 nucleic acid binding GO:0003674 molecular_function GO:0005575 cellular_component GO:0008150 biological_process |
| InterPro families | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
| Orthology group | MCL40078 |
Nucleotide sequence:
ATGGGTTTTGAGAAACCAACACAGATACAAGCAATAACTTTACCCCATATGCTGCTCGAT
GAGGATTTAATAGGAGCAGCAAAGACTGGTAGTGGAAAAACTTTAGCCTTTCTAGTCCCA
GTTGTTGATAAATTAATTCAAATGAAATTTACAAGAGAAAAAGGGGTTGGGTGTATAATT
ATTTCTCCAACAAGAGAATTGGCACTACAAACTAATGAGGTGTTAAAAATGATACTGAGA
GATATTAATTTGTCATATGGCTTGTTTGTTGGAGGTGAAAAAAAGTTGAAAGAGGCGCTA
TTATTGCAAAAAGGTGTAAATATTGTAGTTGGTACACCTGGAAGGATCTTAGATCATTTA
AAAAGTACTGAGAAGTTTAAATGTGATAATTTGAAAATCCTTATCTTGGATGAAGCCGAT
AAACTTCTTGAAGCTGGTTTCCAGAAGCATATTGAAGGAATTATTAAAAAACTACCAAAA
AACAGACAAACAGTTTTATTTAGTGCAACCATAGATGACAAGGTAGAAAATCTAGCTCGG
TTAGCATTAAGAAGCGACCCGAAACTCATATGTGTACAGGACGACAAACAATCAACAGTG
AAAAATCTTCAACAAGGATATTGCATTTGTCCCGTTCAAAACAGAATATCTTGGTTGTAT
AAGATGTTGAAGAAAACGAGAAAATTAAAAATTATAGTATTTTTTTCTTCTTGCAAGTCG
GTCGATTTTCATTACGAGTTCTTTAGAAATCATTGTAAAGCTTCAGTTTTAAGTTTACAT
CTGGAAAATATAATACAAACAGATGGCACCATGAAAATACTCGCCCGTAAAGCATATTTG
TCTTTCCTTAGATGTTACAGTAAACATCCAATGAGTGAGGTGTTTGATGTAAAGAACTTG
GACCTGAAATTGTCATCACAAGCTTTTGTTCCAAGAACAACCCCATGTTGA
Protein sequence:
MGFEKPTQIQAITLPHMLLDEDLIGAAKTGSGKTLAFLVPVVDKLIQMKFTREKGVGCII
ISPTRELALQTNEVLKMILRDINLSYGLFVGGEKKLKEALLLQKGVNIVVGTPGRILDHL
KSTEKFKCDNLKILILDEADKLLEAGFQKHIEGIIKKLPKNRQTVLFSATIDDKVENLAR
LALRSDPKLICVQDDKQSTVKNLQQGYCICPVQNRISWLYKMLKKTRKLKIIVFFSSCKS
VDFHYEFFRNHCKASVLSLHLENIIQTDGTMKILARKAYLSFLRCYSKHPMSEVFDVKNL
DLKLSSQAFVPRTTPC