| New model in OGS2.0 | DPOGS207615 |
|---|---|
| Genomic Position | scaffold240:+ 202460-207712 |
| See gene structure | |
| CDS Length | 1857 |
| Paired RNAseq reads | 1196 |
| Single RNAseq reads | 3184 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006357 (0.0) |
| Best Drosophila hit | pitchoune, isoform A (0.0) |
| Best Human hit | ATP-dependent RNA helicase DDX18 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to pitchoune CG6375-PB [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC000825 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0003724 RNA helicase activity GO:0005634 nucleus GO:0005730 nucleolus GO:0003676 nucleic acid binding GO:0005524 ATP binding |
| InterPro families | IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL11761 |
Nucleotide sequence:
ATGCCGACTCCGGACAAAATATTGATGAGGAAAATTAAAAAACGGGAAAAGAAAAAATTA
AAACTAATATCCAAAAAAGCCAATGCCGATCCGGACACCACAGAAAAAGCTAAAGGTGAC
GACTGTACTGAAAAAGAATTAAAGAGGCCCTCTGATAATAAGGAACAAAGCAATGGCGTA
ACCTCAAAAAAAAAGAAAAAGAAGCCTAAAGTTGAAGAAAAAATAGAGTCAGAGGAAATA
AAAGATGAACCAGATACAGATGGTGAGATGGATGAAGGTGGCCAAGAAGATGTTGAAAAC
AATGAAATTAAAACCAATGAGGAAAGTCAATTGCCAGGCTCCAGTTTATGTCTTGGAATT
TTGTCTGACCAGAAATTCACAGCACTTGAAGGAAAAATATGTGAAGCTACACTCATGGGT
ATCAAGGATATGGGTTTCACAACTATGACTGAGATACAAGCTAAGGCTATTCCACCGTTA
TTAGAAGGGAGAGATCTCGTTGGAGCAGCTAGAACCGGCTCAGGAAAAACGTTAGCCTTT
CTTATACCAGCTATTGATTTGATCTACAAATTGAAATTTAAACCTAGGAATGGTACTGGT
GTCATTATTTTGTCTCCAACTAGAGAGTTGTCAATGCAAACTTTTGGTGTTTTGATGGAA
TTGATGAAATACCATCATCACACTTACGGATTGGTTATGGGTGGTGCTAACAGAAGTACA
GAGGCACAGAAGCTTTCCAAAGGTATTAATATTCTGGTAGCAACACCTGGCAGGCTTTTG
GATCACCTACAAAATACACCAGACTTTTTGTACAAAAATTTACAGTGCCTTGTCATTGAT
GAAGCCGACAGAATACTTGAAATTGGATTTGAAGAGGAAGTTAAACAAATAATAAGATTA
TTGCCAAAACGGCGTCAAACAATGCTTTTCAGTGCTACACAGACAAAAAAAACAGAATCT
TTAACAGCTTTGGCTGTTAAGCATGAACCTGTGTATGTTGGTGTTGATGACCATAGAGAG
CAGGCTACAGTAGATTCTTTGGAACAAGGTTATATAGTTTGCCCATCAGAAAAAAGAATG
ATGGTCCTATTCACATTCCTTAAGAAGAATAGAAAAAAGAAGGTTATGGTTTTCTTGTCA
ACTTGTATGTCCGTCAAATACCACCATGAGCTCTTTAACTATATTGATCTACCAGTTATG
TCCATACATGGCAAACAACAACAAGCAAAACGCACAACAACATTTTTCCAGTTTTGCAAT
GCCGAGAGTGGAATATTATTATGTACTGATGTGGCCGCTCGAGGTTTGGATATACCCGCT
GTTGACTGGATCGTTCAATATGACCCTCCGGATGATCCAAAAGAATATATCCACAGAGTA
GGAAGAACCGCAAGAGGACTCGGTACAAGCGGACATGCATTATTGTTCTTGAGACCTGAG
GAATTAGGCTTCCTGAGATATTTGAAACAGTCCAAGGTGACACTTAATGAATTTGAGTTC
TCATGGAACAAAGTAGCAGATATACAATTACAATTAGAAAAATTGATATCAAGAAACTAC
TTCCTGAACCAGTCTGCCAAGGAGGCGTTCAAGAGTTATTTGCGAGCATATGATTCTCAC
CATCTAAAGACTATATTCGACATCGATACGATCGATCTGGCCAAAGTGTCCAAATCCTTT
GGTTTCACCGTCCCGCCAGCTGTCGAATTAAAGGTTACGAGCAAAGGTCCGACGCAAAAG
AGGAAAGGTGGCGGCGGTTTCGGATATTTCAAAACATTGAACGCTCCACAGCATAAAAAA
GCAGAGAAAACAAAGATATACAGACAAAAAGGTAACAATCAAAAACAAAGAAGTTGA
Protein sequence:
MPTPDKILMRKIKKREKKKLKLISKKANADPDTTEKAKGDDCTEKELKRPSDNKEQSNGV
TSKKKKKKPKVEEKIESEEIKDEPDTDGEMDEGGQEDVENNEIKTNEESQLPGSSLCLGI
LSDQKFTALEGKICEATLMGIKDMGFTTMTEIQAKAIPPLLEGRDLVGAARTGSGKTLAF
LIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGGANRST
EAQKLSKGINILVATPGRLLDHLQNTPDFLYKNLQCLVIDEADRILEIGFEEEVKQIIRL
LPKRRQTMLFSATQTKKTESLTALAVKHEPVYVGVDDHREQATVDSLEQGYIVCPSEKRM
MVLFTFLKKNRKKKVMVFLSTCMSVKYHHELFNYIDLPVMSIHGKQQQAKRTTTFFQFCN
AESGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGLGTSGHALLFLRPE
ELGFLRYLKQSKVTLNEFEFSWNKVADIQLQLEKLISRNYFLNQSAKEAFKSYLRAYDSH
HLKTIFDIDTIDLAKVSKSFGFTVPPAVELKVTSKGPTQKRKGGGGFGYFKTLNAPQHKK
AEKTKIYRQKGNNQKQRS