| New model in OGS2.0 | DPOGS207618 |
|---|---|
| Genomic Position | scaffold240:+ 222853-226565 |
| See gene structure | |
| CDS Length | 2100 |
| Paired RNAseq reads | 446 |
| Single RNAseq reads | 1076 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006359 (0.0) |
| Best Drosophila hit | CG9799 (6e-175) |
| Best Human hit | WD repeat-containing protein 36 (2e-167) |
| Best NR hit (blastp) | PREDICTED: similar to wd-repeat protein [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to wd-repeat protein [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0006364 rRNA processing GO:0032040 small-subunit processome |
| InterPro families | IPR015943 WD40/YVTN repeat-like-containing domain IPR019775 WD40 repeat, conserved site IPR011047 Quinonprotein alcohol dehydrogenase-like IPR001680 WD40 repeat IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR007319 Small-subunit processome, Utp21 IPR019781 WD40 repeat, subgroup |
| Orthology group | MCL14213 |
Nucleotide sequence:
ATGACTGGTGATAGTTTTCACGTTTATACAGCCAGCGAAAACGATATATACGCATGGAGA
CGAGGCTGCGAGCTAAAGCACGTTTACAAGGGACACCAGGCACCGATACACCAGCTATTA
CCATTTGGAGTTCATCTCATATCAATAGATAAAGATAATGTCCTTAAAATATTTGACATT
AAAGAGGGATCAGAGTTTCTCGATCTCAAGTTCGATGAAACTCATTTCAAAATTACAACT
TTATGTCATCCACCCACTTATCTTAATAAAATATTACTTGGCAGTAAACAGGGCCAACTC
CAGATATGGAATATTAGAACTTCAAAATTGGTGTATACATTTAAAGGTTGGGACTCACCT
GTGACAGTTACAGAAGCTGCTCCAGCAATTGATGTTGTAGCTATTGCTTTGGGTAATGGA
AAAATTATTCTTCATAATCTCCGTTATGATCAAGAGGTAATGGAGTTTATTCATGATTGG
GGCAGAGTTAGTTGTTTGTCATTTAGAATGGATGGAGTGCCCATAATGGTAACAGGAAGT
ACACAAGGACATTTAGTTATGTGGGATTTAGAAGAGAAAAGAGTGAAGTCACAGATACAG
TCAGCTCATTTTGCTAAAATAGCTGGTTTACAATGTTTAAATTCTGAACCACTAATGGTT
ACCAATTCCCAAGATAATTCATTAAAAATGTGGATTTTTGATATGCCAGATGGAGGGGCT
AGACTTTTGAAGAAAAGGGAAGGTCATTCTTTACCTCCAACGATAGTGCGCTACTGTGAG
CCAACTGGTGGAAACATTCTTGCAGCAGGCAGTGATAGCAGTCTTCATATTATGAATACA
GTAACAGAAACTTTTAACAAAAGCATGGGTAAAGCCTCATACAACAGGAAAGCATCCAAA
AAGAAAAAAAGATATCAGATAGATACAAAAATTCTTCCACAAATAACTAATATAAGCTCC
TGTATGCAAAGGGATAAGCAATGGGACAGTATTGCAACATTGCATGAAGGAAAGTACTTG
GCTACTACTTGGTCATATAATAGAATGTGTATGGGAACACACAAATTAAAGCCACCTGAT
ATGGAAAAAAGTACTCTGTCAACCTGCTTGACGGTAACACATTGTGGCAATTTTGTTATT
ATTGGTTATAGTAATGGACAAGTGCATAAGTTTAATATGCAGTCAGGCCTTTACCGAGGC
CATTACGGCAAAGAAAACAAACAGGCCCACAAAGGAGCACTGAGAGGCGTAGAAACAGAT
ATCTGTAATCAAAGGCTCATTACTGTTGGTGCTGACGATAAACTTAAATTCTGGCATTTT
AAAACTGCTACCACCCCATATCATGTACTGAGATTGGATGAATCTGTGAGTATGACAAAA
TGCCACAGGGAAAGTGGTTTGCTGGCGTTAGCAAATGAAGATTTTACAATTACACTGGTC
GATATAGACACCATGAGAGTTGTTAGAAACTTCGAAGGTCATGTTGGTAAAATAAACGAC
ATTGATTTTGATTGTCAAAGCAGATGGTTAGTGTCATCATCTATGGATTGTACAATTTGT
ACTTGGGATATACCAACTTCACAACTGGTTGATATATTTTCTGTTGAACAGCCATGTACA
TCTCTAACTATGTCACCAACCGGTGATTATCTGGCGACGTCCCATGTGGGTGAGCTTGGG
ATCTGTCTTTGGGCCAACAGATTGTTGTATAGCAAAGTCTTCCTCAAGCCCGTTGATAGA
AATGATGTGCCGCGATTGAAACTACCAACTACTGCAGCCGAGAAACCTGATATAGATGAT
ATAGGAACAATTGATTTGGGCGATGACGAATATAAATCACCGGAACAAATCAGCGAGGAA
CTTTTAACACTATCTGGCCAGCCTACATCAAGATGGCTGAATTTGCTCAATTTGGACGTA
ATAAAACGTAGGAATAAACCCAAAACGCCTTTGACGGTTCCCAAATCGGCGCCATTCTTT
CTCCCAACAATCCCAAGTCTTGACCTTGAATTCGATTTAGAAAAGGAAAAGGCGGGAAAC
ACGAAAAAGTTGCTCATACCGGATACATTGTCAACTTTAACGCCATTTGCAAAAAATTGA
Protein sequence:
MTGDSFHVYTASENDIYAWRRGCELKHVYKGHQAPIHQLLPFGVHLISIDKDNVLKIFDI
KEGSEFLDLKFDETHFKITTLCHPPTYLNKILLGSKQGQLQIWNIRTSKLVYTFKGWDSP
VTVTEAAPAIDVVAIALGNGKIILHNLRYDQEVMEFIHDWGRVSCLSFRMDGVPIMVTGS
TQGHLVMWDLEEKRVKSQIQSAHFAKIAGLQCLNSEPLMVTNSQDNSLKMWIFDMPDGGA
RLLKKREGHSLPPTIVRYCEPTGGNILAAGSDSSLHIMNTVTETFNKSMGKASYNRKASK
KKKRYQIDTKILPQITNISSCMQRDKQWDSIATLHEGKYLATTWSYNRMCMGTHKLKPPD
MEKSTLSTCLTVTHCGNFVIIGYSNGQVHKFNMQSGLYRGHYGKENKQAHKGALRGVETD
ICNQRLITVGADDKLKFWHFKTATTPYHVLRLDESVSMTKCHRESGLLALANEDFTITLV
DIDTMRVVRNFEGHVGKINDIDFDCQSRWLVSSSMDCTICTWDIPTSQLVDIFSVEQPCT
SLTMSPTGDYLATSHVGELGICLWANRLLYSKVFLKPVDRNDVPRLKLPTTAAEKPDIDD
IGTIDLGDDEYKSPEQISEELLTLSGQPTSRWLNLLNLDVIKRRNKPKTPLTVPKSAPFF
LPTIPSLDLEFDLEKEKAGNTKKLLIPDTLSTLTPFAKN