| New model in OGS2.0 | DPOGS213271 |
|---|---|
| Genomic Position | scaffold1029:- 15346-25968 |
| See gene structure | |
| CDS Length | 3114 |
| Paired RNAseq reads | 306 |
| Single RNAseq reads | 857 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001187 (2e-46) |
| Best Drosophila hit | CG17689, isoform A (2e-81) |
| Best Human hit | family with sequence similarity 48, member A isoform b (5e-31) |
| Best NR hit (blastp) | AGAP012403-PA [Anopheles gambiae str. PEST] (3e-128) |
| Best NR hit (blastx) | AGAP012403-PA [Anopheles gambiae str. PEST] (1e-100) |
| GeneOntology terms | GO:0070461 SAGA-type complex |
| InterPro families | IPR021950 Spt20 family |
| Orthology group | MCL16613 |
Nucleotide sequence:
ATGGATGGTTTAATTCACGCGGCATTGGAAGCAGAGGTAATACTTAACCGGGCTAAACAT
GTGAATACAAAGCTAACAAATTTTGACAGTAGTGTCTCAGATCATAAAATGACTTGGACC
CAAGAAAAGATGCACCTAGCGGAAACTGTTGATGAATCAAGGATGAAGTTTCAGAAAAAT
TCTGTCAGTGGTTCAGCAAAAACTGCAGAAAAATTTGATTTATTTAAGAAATTACATGAA
TTGTACAACGAGTTAAGTAGAGATGAAACTTCACAAGCAAACTATCAAGGGCTAAAGACG
ACATCATATTTATTGGAAAAGTTGTTAGCAACCTACAACCTTAATACATTAATAATTAAT
TTATATCCTGGTAACAAGGGTTACTCTCTGTCCCTTAAGATAAATGGAACTGCTCAGAAC
ATAAACCCACCGGATGCAAATGCATCATCAAGTCAAGAAGAAACTTTAATAGAAACTCCT
CGTTGGCCATATGAAGAAGAAGAGTTATTAAGTTATATAGATAATGAAGAATTGCCCGTA
GTCTTGTTAGATCTCCTTGAGTCCGAACACTCGTGTTTATTCTACTCTGGCTGCATCATA
GCTCAGATAAGAGATTATAGGCAAGCATATCCAAACTTTGTCTGTGATACACACCATGTG
CTCTTAAGGCCCACAAACCAGAGTATAATAACGGATGCGATGTGTATCGGTCGAAGCGGT
TGGGCGGGTGAAGAGCGGGGGGCTTTGGAGGCTGTCGAGGCGGCGTTAGTGCACGCGGCC
GCGCCCCCGCTGTGTCTAGAGCCTCGGCCGGCGGTCGGTCTGCTAGCGGCTAGGCTTCAT
GCTGCCCCAAGACTGTTTAATACACCGAGGATACGACGTCAGGCTCGGAGATTTTCACAG
GTGTCGGTTAATAGAAAAAGGAAATTGGACCAGTTCACTCATTATCATGGTCTGGAGTTG
TTGGAGTTAATACACCGTCAGAGAGCGAAAAACAGCCGCCAAACTGTTCCACACACACGG
TTAACATCGAAATTCCCAAAGAAACCACCGGAGGTGTTCAAACCTATAGAACCTCCAAAA
ATGGATCCGTTGCCGCTCGCACTACCGTCTGAACCGAACGCCCCGTTACGGTTGGCCCGC
GCCTATGAGCGTCCACGCCCCACACCGGACTGCCAGCCGCAGTTGGTGGAAGAGTACATC
CTGGAAACTGAGAAGAGCTCCCCGCACGCCGGAGCTGGTTTCTTCCACATCAAACTGTCT
ATACTACAGAGGCCATCCGACCAAGAGTTCCTTGGTGAACTGTATGTTGATAGAGATCAC
GTGGAAGGTGAAAGAAATGGAGCAGCCTGTAGATTCTCATTAGGTTCGCGACTTCAAGCC
AACAAATACATACAACAGTTCACAGAAATTTTCACAGAGGAAGGTAGAAAATCTGTTCGG
ATAAAGCATATTGTGCCCGGACAGTTACCGAGAGTTTCCTTCACAGGAGGCATGAGAGAT
ATGCAAAGAACAGCACAAGCGAACAACTCCACAGTTCAGACTCATGCCACAACCGTGCCT
GTTGTAACCTCCGCCATAGCTGCTACACCCAATGCCCATTCAAACGCAAGACAGCTGCCT
ATACTGCAGGCACAATTGCAACAAGTTGGCAATGTTAACGTGACAGCCGTGGGCACTGTT
GTGGGCAGTGTGGGCACGGTGGGCAACGTGGGCACAGTGGGCAGTGTGGGCAACGTCGGC
ACCGTGGGCACCGTTGGCAACGTGGTAAATGTTGGCCCTGCGACCGGTGTAACAGAAGCA
TTGAAACAGCAACCATCTCCAACAACACCCAGGCTTTCGCCACAGGCGTCAACGAATCAA
TTGCTAGCACAACAGCTCACTAATCCGCCGCAACCTCTCAACCCTCAGAAGATGCAATCA
GCCATCATACACATACAGCATCCCTTGATGTCGTCTTCGGGAACATCACAGGTTCAGAGT
ATACAGTATACAAATACAACGACCAATCAGCAGAAGACGACTATAACTAAAGCGAGATCG
ACGAACCCAGCGATCAACGCGCTCGTTACTAGTCTTATGAATTCAGCGCAACAGTTTCAG
CAAGCGGCAAGTCAAAATGCGGCTAAAGCGGTGGTGAGCACTTCAAGCAGTAACGCTACC
ATCCTGAATCTATTGAACAGCGCACCGGCTGCCATGACTCACGTCACCACCAGCGATAGC
GACACACACAAGCTTCTGACCCGAACTGTTTCTATAGCGGGGGCTAGACTCATAGCTTCG
ACGAGCAGTCATACATTACCTACATATACACAACAGGTAATGACTGGTTACACACGTGAG
AACGAGTCAACGAACGTGTCTAGTAGTGAGAGTGCTTTGCTAGAGAGGTTGATGGGTCCC
GAGCCGTCCTCAACACCGCCGTCTCAGACGCCACAGACGGCACAACCACAGCCACAACCA
CAACCACAACCTGTCTGTCATTTGCAGGTAATGACTGGTTACACACGTGAGAACGAGTCA
ACGAACGTGTCTAGTAGTGAGAGTGCTTTGCTAGAGAGGTTGATGGGTCCCGAGCCGTCC
TCAACACCGCCGTCTCAGACGCCACAGACGGCACAACCACAGCCACAACCACAACCACAA
CCTGTCTGCCATTTGCAGGGTCTAAGTTTAACATCGCTTCAGGGCCTACAGAGTATCCAG
GGGTTGCAAAACGTTCAAGTCCAGATACCTGGTCTATCTGCGCCTATATCATTGTCACTG
AACGTGTCAGGTGCACCCAGCGGGTTGTTGGTCTCAGTGCCGCCTACTACTTCTGTGGTA
CTCACAAATCAGCCTTCAGTGTTGTCATTGCCTATAGCTCAACTGATGTCCGGCGGTGTG
AAGGGCGGCGTCCGCAGTGGATCGGTTCAGGTGGTCCGAGCGCCGCGACCGGCGAGACTA
GTCCGACCCACCCGACCGTCGCTGCCAAATATTACAAACATCACCAATATCACTAACATG
ACGAACATACCATCCACTCCGGGCACAACTCAGTTTATAGCCCAATCGCAGGGACAGAGT
CAAGTGTTGAACGCCCACCAGGTGCGAAGAAAATCAAACCCTGACAGTTCATAG
Protein sequence:
MDGLIHAALEAEVILNRAKHVNTKLTNFDSSVSDHKMTWTQEKMHLAETVDESRMKFQKN
SVSGSAKTAEKFDLFKKLHELYNELSRDETSQANYQGLKTTSYLLEKLLATYNLNTLIIN
LYPGNKGYSLSLKINGTAQNINPPDANASSSQEETLIETPRWPYEEEELLSYIDNEELPV
VLLDLLESEHSCLFYSGCIIAQIRDYRQAYPNFVCDTHHVLLRPTNQSIITDAMCIGRSG
WAGEERGALEAVEAALVHAAAPPLCLEPRPAVGLLAARLHAAPRLFNTPRIRRQARRFSQ
VSVNRKRKLDQFTHYHGLELLELIHRQRAKNSRQTVPHTRLTSKFPKKPPEVFKPIEPPK
MDPLPLALPSEPNAPLRLARAYERPRPTPDCQPQLVEEYILETEKSSPHAGAGFFHIKLS
ILQRPSDQEFLGELYVDRDHVEGERNGAACRFSLGSRLQANKYIQQFTEIFTEEGRKSVR
IKHIVPGQLPRVSFTGGMRDMQRTAQANNSTVQTHATTVPVVTSAIAATPNAHSNARQLP
ILQAQLQQVGNVNVTAVGTVVGSVGTVGNVGTVGSVGNVGTVGTVGNVVNVGPATGVTEA
LKQQPSPTTPRLSPQASTNQLLAQQLTNPPQPLNPQKMQSAIIHIQHPLMSSSGTSQVQS
IQYTNTTTNQQKTTITKARSTNPAINALVTSLMNSAQQFQQAASQNAAKAVVSTSSSNAT
ILNLLNSAPAAMTHVTTSDSDTHKLLTRTVSIAGARLIASTSSHTLPTYTQQVMTGYTRE
NESTNVSSSESALLERLMGPEPSSTPPSQTPQTAQPQPQPQPQPVCHLQVMTGYTRENES
TNVSSSESALLERLMGPEPSSTPPSQTPQTAQPQPQPQPQPVCHLQGLSLTSLQGLQSIQ
GLQNVQVQIPGLSAPISLSLNVSGAPSGLLVSVPPTTSVVLTNQPSVLSLPIAQLMSGGV
KGGVRSGSVQVVRAPRPARLVRPTRPSLPNITNITNITNMTNIPSTPGTTQFIAQSQGQS
QVLNAHQVRRKSNPDSS