New model in OGS2.0 | DPOGS215634  |
---|---|
Genomic Position | scaffold2955:+ 6323-13360 |
See gene structure | |
CDS Length | 2796 |
Paired RNAseq reads   | 1217 |
Single RNAseq reads   | 2728 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003534 (3e-27) |
Best Drosophila hit   | CG13350 (3e-142) |
Best Human hit | WD repeat and HMG-box DNA-binding protein 1 isoform 1 (4e-109) |
Best NR hit (blastp)   | acidic nucleoplasmic DNA-binding protein 1 [Bombyx mori] (0.0) |
Best NR hit (blastx)   | acidic nucleoplasmic DNA-binding protein 1 [Bombyx mori] (0.0) |
GeneOntology terms   | GO:0003677 DNA binding |
InterPro families    | IPR015943 WD40/YVTN repeat-like-containing domain IPR019775 WD40 repeat, conserved site IPR011046 WD40 repeat-like-containing domain IPR001680 WD40 repeat IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR019781 WD40 repeat, subgroup |
Orthology group | MCL14314 |
Nucleotide sequence:
ATGAAGATTGATAGTAAACCACTTCGATACGCTCATGCTGAGGGTCACACAGATGTATGC
TATACTGAGGATGGAAAACATATCATTACTTGTGGTCACGACGGAGACGTAAGAATTTGG
CTGGATATAGAAGATGACGACCCAAACTCTCACTGTGTTGGTGAAAGTGCTTTGGCCGTT
TGCTTCAAAGATGGCAGGTTGTATGTGGCCACTGATAATCATGCTGTTCAAGCATACACA
TTCCCGGCATTTGATAAAGATGGGATAATAACAAGGTTTACAGCACCAGTCACTCAAATT
ATGTCTAAACCTAAAGTAGAAGCACTGGGTTGTTCTTCTGAGAATATGGAAGCGAAAATT
TGCAATTTGGAAGGTGGTGCCCCATTATTTGTCATGTCCGAACAAAAAGGCCCAGTACTT
AGTATTGCAATATGTCCAAACATGAAGCATGCTTGTACAGCATCAGGTGATGGAATTATG
AGGGTCTGGGATATTGATACACAGAAAGTTATGAAAGAACTCTCCTGTGTTCCCAAGATA
AACACTTTCTATTCAGCTAAAGTGCTCTGTAGAATGGATTTTGAGCCACAAGAAGGAAAA
TCCTTAGCTTATCCCAATAATAGAGAGATCATTATATTGGATTGTGAATCATGGAATCAG
AGAGTAGCGTTCACACATAGTACAATTAAATGTGCTATTTCACAATGCCTTTTCTCTCCA
TCTGGTCAATATCTGGCGGGGAGCACAGTGGCTGGTCAGATAGCTGTCTGGGAGGTGGAT
TCCGGAGCCTGTATAGACATCATTGAACATCCCACATCACATAATGTGTCTTCTATGACT
TGGAATCCTAAAGATAATGGTGTTCTGGTGTACTGTGATGTTGCTGGTCAAATGGGTATG
TTGGTCAACTGTTATGGGAAGGACAGTAACAAAATTGGTGATGATAATACAGATGTGGAG
ATGGTCGAAAGAGATGACGAAAATGACTTGGACAATTTAATAGAGAATTATGAAAGTGAT
GACGATAATGCTATATCCTTGGAAAGAATCAAGAATCAGACGCTAAGGATGGTCGACCAG
GAGGATTCCAGGCCTGTGTCAAGAGCTACAGTGGTTCCGCAGAGTACATCTGCACAACTG
GCATTCCAACCGTCCTCAACACCTGTACATTTAGAACATAGATACATGTGTTGGAACGAT
ATCGGCATAGTCAGATGTCATACAGCCGAGAACGGCGAGTCTACGATAGATGTCGAATTT
CATGACTCCAACCTACACCATGGCATACATTTAAACAACTATTTAAATCACACCATGGCT
AGTCTGTCCGCCAATGTTCTGGTTTTAGCCTGTGAGACACCGAGCAAACTGGTGTGTATA
TCGCTAGCTGGTAGCAGTCGTGAGTGGAGCGTCTCCATGACGGAGACGGAGGAGGTGGTG
TGCGTCGGCGCTGGCGGAGTGGTCGCGTGCTGCACCAGCGCTAGACTACTGAGGCTGTAC
ACGCCGCTGGGAACCCAGAGACAGGTGATATGTCTCTCGGGGCCGGCTGTGACGCTCGCG
TGTTACAACACTACAGTCGCTGCCGTGTACCACAGGACGGACCCCGGACTGACTGACCAA
CATCTCGCTATGGACATCATTGCTCTTAATGGTCGTCAGGTGCGCAGTAAAACAGTACCG
GTGCCTCTATCGGCGGGGGCCAAGCTATCCTGGCTGGGCGTGTCAGACGCGGGGTCCCCC
TGTGCCCACGACTCCGCTGGGGTCCTACGACTCTATGACGTCACTAGCGCCCTCTGGTTA
CCAGTCTGCGACACCAGCCATCATTCTAAGGGGGTTTCGGACTCGTGGTTTATTGTGTCC
GTCAGTGAACCGACACAGAAAGTTCGAGCCATATTATGTAGAGGTGCCTCATTCCCGTTG
ACAGCACCGAAACCTATCATCTCTGAGTTAGCGATACAGATACCGTTATGTGAGTTAGAT
ACGGAAAAGGCGCAGTACGAGGAGCAGTTGGTGCGATGGGCGCATATGACGTCAGATGTT
GACATTAAAACCGCCAGAGAGACCGCCTTGAAATTGTTTGCTTTGGCGTGTCGCAGTGAA
ATAGAGCAAAGGGCGTTGGAACTAATGGAATTATTGAGAGACGATCGTCTGATACCTCTC
GCTGCGAAATACGCGTCGCGGCTAGGGCGGATACATCTCGCTGAGAAATTAACGAGCCTC
GCTGAGACCTGGGAGAGTGACGCGAGTAAGGTTAACGAAGCCCAAACGACGCACTTCCGA
GAGCTGGACACACAGGAAACTTATGACGTCACAGAACAACACGAGGACCTGAACACGAGC
TTAATAATACCACAGAAAACAACGAAAAAGAAAGAGACGGAAACTGCTTTAAAACCTGTA
CCAATCAAATCATCGCCCGGCGGCGCCAGGAATCCATTTAAGAAACATCTAGATAACAAA
CCTAGCCAGAGTCCACTCAGCCTCACAGAACGAACGCTGGTCGAAGTACATCAACAACAA
ACTGACGATACCGAAAACAGTGACTCTCTAAAACCGGCAGACGGTGAGACGTTTGTAGAA
TGGTTTTCAAGGAACAAGTCCATATTAGAAAAACAAAATCCGGATCTTACACCCGCGGAA
TTAACGAGACACTGCGTTAGGACGTTCAAGAGTTCGCAGAACAAAGTGCTAGAGAATGGC
CAGAAGAGAAAATTGGGAGAAGACGATGAGACCCCGGCCACTAGCGCGCCCAAGCAGTCC
AAGCTAAGCGCATTCGCATTCTCCAAAAAGACTTGA
Protein sequence:
MKIDSKPLRYAHAEGHTDVCYTEDGKHIITCGHDGDVRIWLDIEDDDPNSHCVGESALAV
CFKDGRLYVATDNHAVQAYTFPAFDKDGIITRFTAPVTQIMSKPKVEALGCSSENMEAKI
CNLEGGAPLFVMSEQKGPVLSIAICPNMKHACTASGDGIMRVWDIDTQKVMKELSCVPKI
NTFYSAKVLCRMDFEPQEGKSLAYPNNREIIILDCESWNQRVAFTHSTIKCAISQCLFSP
SGQYLAGSTVAGQIAVWEVDSGACIDIIEHPTSHNVSSMTWNPKDNGVLVYCDVAGQMGM
LVNCYGKDSNKIGDDNTDVEMVERDDENDLDNLIENYESDDDNAISLERIKNQTLRMVDQ
EDSRPVSRATVVPQSTSAQLAFQPSSTPVHLEHRYMCWNDIGIVRCHTAENGESTIDVEF
HDSNLHHGIHLNNYLNHTMASLSANVLVLACETPSKLVCISLAGSSREWSVSMTETEEVV
CVGAGGVVACCTSARLLRLYTPLGTQRQVICLSGPAVTLACYNTTVAAVYHRTDPGLTDQ
HLAMDIIALNGRQVRSKTVPVPLSAGAKLSWLGVSDAGSPCAHDSAGVLRLYDVTSALWL
PVCDTSHHSKGVSDSWFIVSVSEPTQKVRAILCRGASFPLTAPKPIISELAIQIPLCELD
TEKAQYEEQLVRWAHMTSDVDIKTARETALKLFALACRSEIEQRALELMELLRDDRLIPL
AAKYASRLGRIHLAEKLTSLAETWESDASKVNEAQTTHFRELDTQETYDVTEQHEDLNTS
LIIPQKTTKKKETETALKPVPIKSSPGGARNPFKKHLDNKPSQSPLSLTERTLVEVHQQQ
TDDTENSDSLKPADGETFVEWFSRNKSILEKQNPDLTPAELTRHCVRTFKSSQNKVLENG
QKRKLGEDDETPATSAPKQSKLSAFAFSKKT