| New model in OGS2.0 | DPOGS200032 |
|---|---|
| Genomic Position | scaffold1188:- 22138-30511 |
| See gene structure | |
| CDS Length | 1245 |
| Paired RNAseq reads | 6179 |
| Single RNAseq reads | 19439 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012429 (1e-08) |
| Best Drosophila hit | heterogeneous nuclear ribonucleoprotein at 27C, isoform E (2e-92) |
| Best Human hit | DAZ-associated protein 1 isoform a (2e-51) |
| Best NR hit (blastp) | GI24040 [Drosophila mojavensis] (3e-115) |
| Best NR hit (blastx) | hnRNPA/B-like 28 [Bombyx mori] (3e-98) |
| GeneOntology terms | GO:0030529 ribonucleoprotein complex GO:0005654 nucleoplasm GO:0005730 nucleolus GO:0003697 single-stranded DNA binding GO:0003729 mRNA binding GO:0006397 mRNA processing GO:0048027 mRNA 5'-UTR binding GO:0007319 negative regulation of oskar mRNA translation GO:0003730 mRNA 3'-UTR binding GO:0007317 regulation of pole plasm oskar mRNA localization GO:0000166 nucleotide binding GO:0045451 pole plasm oskar mRNA localization GO:0048024 regulation of nuclear mRNA splicing, via spliceosome GO:0007298 border follicle cell migration GO:0045727 positive regulation of translation GO:0043234 protein complex GO:0005515 protein binding GO:0007411 axon guidance |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL14167 |
Nucleotide sequence:
ATGCGTATGAATCCAGACATGGACGATGATGAGAAGGGAAAACTGTTTGTTGGCGGTCTA
TCATGGGAGACATCGCAGGAGAATCTGCAGCGTTACTTCTCCCGCTACGGCGACGTGATT
GATTGTGTTGTTATGAAGAACAGCGAGTCTGGCCGTTCAAGAGGTTTCGGTTTTGTTACC
TTTGCTGAACCCTCACTGGTCAATGTCGTGCTTCAGAATGGTCCCCATCAACTCGATGGC
AGGACAATCGACCCGAAACCGTGCAATCCAAGGACTCTTCAGAAGCCCAAGCGCGGCGGC
GGCTATCCGAAGGTGTTCCTCGGAGGTCTGCCATCCAACATCACCGAGACTGACCTGCGC
GTGTTCTTCGGACGGTACGGCAAGGTCATGGAGGTCGTCATCATGTATGACCAGGAGAAA
AAGAAGTCTAGAGGCTTCGGATTTCTGTCATTTGAAGATGAAATCTCTGTTGAGAGAGTC
ACCCAGGAGCATTTCATCAACCTGAACGGCAAACAGGTCGAGATCAAGCGCGCGGAGCCT
CGCGATGGTTCCGGCAAATTGGGCTCCGGAGGAGGCATGGGCGGGGGCATGGGGGGAGCG
CCCGGAGATGCGCCCGCCGCGGGACAGTGGGGACCACCGCAAGCCGCGCCCATGAATATC
ATACAGGGCCACAACGGACAGATGGGCGGCCCACCGATCAACATGCCCATGGCCGGACCT
AACATAATGCAGGGATACCAGGGCTGGGGAACGTCAGCCGGGCAGACTTCGTACGCCGGG
TACGGTGCGGCGGGCGGCGGCGCGGGCCCTGGCAACTACCAGGGCTGGGGAGCTCCGCCG
GCGCCTCAGGCCCCGCCGCACGCGCCCGCCTGGCCCGCCACCAACAACTACACTCAACAC
GCTCAGCCGCCCGCCCAGGGATACGGCAGCTACGCGAACTACAGCTCGGCGCCGGCGGGC
GCCTCGGCCGGTGGCAGCTGGACTAATTGGAGCATGCCGCAGAACTCCAACTCTACCGGC
TCCGGATCGTACGTTCCGTTGTCGGAGGGCGGTGAGATGTACGGTCGCGGTGGTGGCGGT
GGCACGGGCGCGGCGCCGGCTCTGGCCGGGGCGCTGTCCTCCGCCGCCCTCTCCAAGTCC
TCCTCCGCCGACTACTCTACCTACCAGCAGTACCCGCCCGCCTACCAGCAGGATCAGTTG
GTCGATCAGGGCCCACAAGAGTGGCTCCTCCAGAAAGACAATTAG
Protein sequence:
MRMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGDVIDCVVMKNSESGRSRGFGFVT
FAEPSLVNVVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNITETDLR
VFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFINLNGKQVEIKRAEP
RDGSGKLGSGGGMGGGMGGAPGDAPAAGQWGPPQAAPMNIIQGHNGQMGGPPINMPMAGP
NIMQGYQGWGTSAGQTSYAGYGAAGGGAGPGNYQGWGAPPAPQAPPHAPAWPATNNYTQH
AQPPAQGYGSYANYSSAPAGASAGGSWTNWSMPQNSNSTGSGSYVPLSEGGEMYGRGGGG
GTGAAPALAGALSSAALSKSSSADYSTYQQYPPAYQQDQLVDQGPQEWLLQKDN