| New model in OGS2.0 | DPOGS200681 |
|---|---|
| Genomic Position | scaffold364:- 47026-58826 |
| See gene structure | |
| CDS Length | 2979 |
| Paired RNAseq reads | 2662 |
| Single RNAseq reads | 11516 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008914 (0.0) |
| Best Drosophila hit | CG6227 (0.0) |
| Best Human hit | probable ATP-dependent RNA helicase DDX46 (0.0) |
| Best NR hit (blastp) | DEAD box RNA helicase [Choristoneura fumiferana] (0.0) |
| Best NR hit (blastx) | DEAD box RNA helicase [Choristoneura fumiferana] (0.0) |
| GeneOntology terms | GO:0004386 helicase activity GO:0005524 ATP binding GO:0016787 hydrolase activity |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
| Orthology group | MCL13438 |
Nucleotide sequence:
ATGGTTAGGAGTGGTCGTGACAGGGAGAGGGATCGTAGACGCTCACATAGTCGTTCGGCA
AGTCCGGATAGAAAAAGAAGACGTTCTAGGTCTAGAAGTAGAGATAGAAATTCCAAATCC
TCTAAGAGGAAGCGTAGCCGCAGCAGAGATAGAGATTCCAAGCGCGATCGCAGTAGAGAC
AGAGAGAGGGATCGTAAAAGTGATAAACGAGATGATAAGAGAAATGGTGCAAGTAGTAAG
TCTAGAAAGAAATCTCCAGATAGGGAAAAGGAAAGAGATCGCTCCAAGTCAAAAGAGAAG
GCGGTTAAATCTGAATCCGCTGATTATGCTCCTGGTACAGTAGATAAGGAAGAGGAACAA
AGTAGATTGGAAGCGGAAATGCAAAAACGCCGCGAACGTATTGAGCGTTGGAGAGCTGAA
AGGAAACGTAAAGAATTGGAATCAGCTAAAAAGGAAGTCCAGAAAGGCAGTATTGTGACC
AATATACAGGTTCCGGCTGCTAAAAAGTGGTCTTTAGAAGATGATTCTGGAGACGTTGTT
GAGGAAAAAATTGATGAAGAAGATGAAATTGATCCTTTGGATGCCTATATGCAAGAAGTT
CAACAGGAAGTGCGCAAAGTGAATCAACTAGACCAAGCCCGTGGCATCAGCGTCCCAACA
ACAGGCGGCACAGGAGTTGTCATACTGACCGGAACGGCTAAGAAAAAAGTTACCGAACAG
AAAAATAAAGGGGAGCTCATAGAGCAAAATCAAGATGGCTTAGAATATTCGTCGGAGGAA
GAGACAGAAGATATAAAGGATGCAGCGGCTAATCTGGCATCTAAACAAAGAAAGGAATTA
GCTAAAGTCGATCATGCCAGTTTGGATTATATGTCATTTAGAAAAGCATTTTATACTGAG
GTTAGTGAGCTTGCCAGAATGACGCCAGAAGAAGTTGAGGCATACAGAACAGAGTTAGAG
GGTATTAGGGTGAAGGGTAAGGGTTGTCCAAAGCCTATAAAAAATTGGGCTCACTGTGGC
ATAAGTAAAAAGGAACTTGATATACTGAAGAAATTGGGCTTTGAAAAACCTACCCCGATT
CAGGCTCAGGCTATACCGGCCATAATGTCTGGAAGAGACCTGATTGGTATAGCAAAAACT
GGTTCCGGTAAAACATTAGCATTCATATTGCCTATGTTCAGACATGTTCTCGACCAACCG
CAGTTAGAAGACACAGATGGACCAATATCACTCATAATGACCCCAACGAGGGAACTTTGT
ATGCAGATAGGCAAAGATATTAAGAAGTTTGCCAAGTCTTTGGGCTTGAGAGTTGTCTGT
GTGTATGGCGGAACTGGGATATCTGAACAGATAGCCGAGCTGAAACGCGGTGCTGAGATG
ATAGTCTGTACTCCTGGCCGTATGATCGATATGTTAGCAGCTAATTCCGGACGTGTGACT
AATCTGAGACGAGTTACATACATTGTTCTTGACGAAGCTGACCGGATGTTTGATATGGGT
TTCGAGCCGCAGGTTATGAAGATAATAGACAACGTGCGACCAGACAGACAGACGGTCATG
TTCAGTGCGACGTTCCCGAGGCAGATGGAAGCCTTAGCCAGGCGTATATTACAAAAACCT
ATCGAAGTACAGGTTGGAGGTAGGAGTGTTGTATGTAAGGACGTGGAACAACATGTAGCT
ATACTAGAAGAGGAAGCAAAGTTCTTCAAATTACTGGAACTGTTGGGCCTGTACAGCCAG
CTGGGGAGCATCATAGTGTTCGTCGATAAGCAGGAGAACGCGGACAGCTTGCTGAAAGAT
CTTATGAAGGCATCTTACTCTTGTATGAGTCTGCATGGAGGTATTGATCAATTCGACAGG
GACTCGACTATAGTAGACTTCAAGAACGGCAAGGTGAAGCTGCTGGTGGCGACCAGCGTG
GCTGCCAGGGGTCTGGACGTCAAACAGCTGGTGTTGGTGGTCAACTACGACTGTCCTAAC
CATTACGAGGATTATGTACATCGATGCGGTCGTACCGGTCGCGCGGGTAACAAGGGCTAT
GCCTGGACATTCCTCACGCCGGAGCAGGGCCGATACGCGGGGGACGTGTTGCGAGCCCTC
GAAGCCGCTGGGGCTTCTCCCCCGGCCGAACTCAGGGCTCTGTGGGATAAGTACAAAGAG
GCGCAGGAGAGGGACGGAAAAAAAGTTCACACAGGCGGTGGCTTCAGTGGCAAAGGTTTC
AAATTCGACGAATCCGAAGCCCAAGCGGCGACTGAGAGGAAAAAGTACCAAAAGGCCGCT
CTCGGCCTCCAAGACTCGGACGACGAGGACGTTGAGGGCGACCTCGACCAGCAGATAGAG
GTCATGCTTGCCGCTAAGAAAATTGTCAAAGAAATTAAGCCGGGTGTAGCGACGGCTAAT
CCCCCAGCGGCAGCGGGGGCGAGTGTAGACGGGAAACTTGAACTGGCGAGACGGCTGGCC
TCCAGAATAAACCTGGCCAAGGGCTTAGGCGTCGAACAGAAGGGAGCCACGCAACAAGCG
GCCGAGGCCATACTTAAAGGGAACCCGTCTGCACACACCCTTATCACGGCCAAGACTGTA
GCTGAACAGTTGGCGGCCAAGTTGAACACTCGCCTGAACTACCAGCCTCGCGACGAGAGC
ACGGCTGAACCGGCCGAGGAGGTGTTCAGGAAGTACGAGACGGAGCTCGAGATAAACGAC
TTCCCTCAGCAGGCCAGGTGGAGGGTCACCAGCAAGGAGGCGCTAGCGTTGATCAGTGAA
TATTCGGAGGCTGGTATCACAGTCAGGGGGACGTATGTACCCCCAGGGAAAGCTCCACCG
GAAGGAGAGAGGAAACTGTACCTGGCCATCGAAAGTTCCCAAGAGCTGGCTGTAGCTAAA
GCGAAGTCAGAAATAACAAGGCTGATTAAAGAAGAGCTCCTCAAGCTACAGACGTCAGCT
CATCACATGATTAACAAAGCTAGATATAAGGTCCTCTGA
Protein sequence:
MVRSGRDRERDRRRSHSRSASPDRKRRRSRSRSRDRNSKSSKRKRSRSRDRDSKRDRSRD
RERDRKSDKRDDKRNGASSKSRKKSPDREKERDRSKSKEKAVKSESADYAPGTVDKEEEQ
SRLEAEMQKRRERIERWRAERKRKELESAKKEVQKGSIVTNIQVPAAKKWSLEDDSGDVV
EEKIDEEDEIDPLDAYMQEVQQEVRKVNQLDQARGISVPTTGGTGVVILTGTAKKKVTEQ
KNKGELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKELAKVDHASLDYMSFRKAFYTE
VSELARMTPEEVEAYRTELEGIRVKGKGCPKPIKNWAHCGISKKELDILKKLGFEKPTPI
QAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHVLDQPQLEDTDGPISLIMTPTRELC
MQIGKDIKKFAKSLGLRVVCVYGGTGISEQIAELKRGAEMIVCTPGRMIDMLAANSGRVT
NLRRVTYIVLDEADRMFDMGFEPQVMKIIDNVRPDRQTVMFSATFPRQMEALARRILQKP
IEVQVGGRSVVCKDVEQHVAILEEEAKFFKLLELLGLYSQLGSIIVFVDKQENADSLLKD
LMKASYSCMSLHGGIDQFDRDSTIVDFKNGKVKLLVATSVAARGLDVKQLVLVVNYDCPN
HYEDYVHRCGRTGRAGNKGYAWTFLTPEQGRYAGDVLRALEAAGASPPAELRALWDKYKE
AQERDGKKVHTGGGFSGKGFKFDESEAQAATERKKYQKAALGLQDSDDEDVEGDLDQQIE
VMLAAKKIVKEIKPGVATANPPAAAGASVDGKLELARRLASRINLAKGLGVEQKGATQQA
AEAILKGNPSAHTLITAKTVAEQLAAKLNTRLNYQPRDESTAEPAEEVFRKYETELEIND
FPQQARWRVTSKEALALISEYSEAGITVRGTYVPPGKAPPEGERKLYLAIESSQELAVAK
AKSEITRLIKEELLKLQTSAHHMINKARYKVL