| New model in OGS2.0 | DPOGS204114 |
|---|---|
| Genomic Position | scaffold710:+ 330-4889 |
| See gene structure | |
| CDS Length | 1788 |
| Paired RNAseq reads | 681 |
| Single RNAseq reads | 1539 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013603 (2e-128) |
| Best Drosophila hit | CG6729 (1e-32) |
| Best Human hit | protein SMG8 (2e-59) |
| Best NR hit (blastp) | PREDICTED: similar to CG6729-PA [Apis mellifera] (5e-107) |
| Best NR hit (blastx) | PREDICTED: similar to CG6729-PA [Apis mellifera] (2e-95) |
| GeneOntology terms | GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0005515 protein binding GO:0045859 regulation of protein kinase activity |
| InterPro families | IPR019354 Smg8/Smg9 |
| Orthology group | MCL12334 |
Nucleotide sequence:
TTCAAACGAGCCCCCACTCCACTTAGAGCTGATCCCGCTGGCCTGAAGAGATTGGAACAT
GCTGTGGAGGACCAGATATACTTCATACTCCGGAAGTCCCGACTTATAACTAATGTCTGT
GCCAAATCTCTATTTGCTATACCTAAGAATGAGGAGTTTGTGTATATAAGCGCTGAGGAG
GTGGGATCGGCTCGCGACACTAGTTCGTTACTCCGTGGCTTAGTGCAGATGTGTTCCGGT
TCAGGCGCCCCGACCTCATCAGACCGACCCAGCTTCAGACATTTCCTTCAAGGTCACCTG
AATTTAGCTTTCGGCGAAGGCTTTGACGATAATGTTGGCAAGTACGCCATGAGCACGTCA
TATTTTGAGCTACCCTCAGCATCATGTTGGCGGGGCGCGGCACGTGTCTTACACCGTCAA
TACTCCCAGCAGTCGACCGTCCTCTTCGACGCCCTGGCCACAGACGTGAGGTTCTCTCAG
GCCAGATGCGCGAAGGTGTTACCCATAGCACAGGCCTCCTACGCGGAGGGACTGCCTCCT
CACTACTCCAGCCAGCACCACGCGCATAAGCTGGTGGTAGCGCTCGGTGTAGTTGAGGCG
ATGGCCCGAGGTCCCCTCGCTGGCGGTGCCCGAACTCGACTTCGGGCCGCCTGCGACACC
ATCAGACGAGCTAGGGAACTGTGCGAGGAACCCAGCCTCACACACCACCCTTGTATACAT
CCCAAACACGACAGTTCCAAAGAGCATTCATCGGGAGTGCGTTATGTGAGTGCGTGCAAC
TGCGGCCGCACGCGTGTGTCACGCGACGACCCGTACTGTGCGCGATCAGCCAACTTCACC
TTCTACACCCTGGCCGCTGAGCAGTGCAATTGTGACACCTTACAAGCGATCAGCTTCCCC
GTCTTTCAACCTTCAACCCCTACATTCAGGGCAGCGTCAGTTAAAGGTGCTACTGTTAAA
ACTCAAGAGTTGTCCGAAGTACGACAGCAGTTAGAGGTCACGGAGGCCGAGTCACCCCAA
GGGGAAGGCTCGCAACGAGGCTCCTGGTCACCCCCAGACGTGCTGTCACCTGGATCAGCG
AGGGACGAAGATGAAGAGGATCCTGAGGATTCCAGCGATGAAGGAATAGAGGTCGTCACA
GTACAGGATAACGGCACTACAGGCACACTTTTTAAATTTCATTCATCAGGACTACCGGAG
CATCTTCAGCCTGGTTTCCTGCCTCACACCAACTACCTCTTGCCGTGGGATTGTGCCGTG
CGCCTGGAGCGTCCCGAGCGAGGGGACCTGGGGGTATGGAGGGGCAGGGGCAGGGGGAAG
GCCCCCTCGCAGAGCCTTACAGTCAAGATATTCATAGGATACGAATATGAGTGTCCAAGA
GGGCACAGGTTCATGATGTCGTCACCCGACACGGTGGTGTCAGGGGGCTCAGGGTGGTCC
CGGGAGGCGGGCGAGGCCGGCGCCGGAGCCCTGCTCGCCTCCAGCTCCATGCCAGTGTTG
TCCTCGTGTTTATGTCGAGCGGCCCAGCCCGCACACCTCGCACGACTGCACGTCGTCACA
CCGAAGGCTTCTATACACGTCACGCTCGACCCTAAGGTGCAGCCAGTCCCAGGCGGTCCA
GTGTTCATTCCTCAGCCGGTCGGATCGCCGCCCATCAAGCTGAGCTCCTCAGCCTATTGG
GTGCTTCGGTTCCCGTACGTGTATGCCCACGAGCACGGCGCTCTGCCCCGAGCGAGACTC
CCGCCCGCCGGAAATGTTCTTCAACCAATGTTCGGACTACAGGAATAA
Protein sequence:
FKRAPTPLRADPAGLKRLEHAVEDQIYFILRKSRLITNVCAKSLFAIPKNEEFVYISAEE
VGSARDTSSLLRGLVQMCSGSGAPTSSDRPSFRHFLQGHLNLAFGEGFDDNVGKYAMSTS
YFELPSASCWRGAARVLHRQYSQQSTVLFDALATDVRFSQARCAKVLPIAQASYAEGLPP
HYSSQHHAHKLVVALGVVEAMARGPLAGGARTRLRAACDTIRRARELCEEPSLTHHPCIH
PKHDSSKEHSSGVRYVSACNCGRTRVSRDDPYCARSANFTFYTLAAEQCNCDTLQAISFP
VFQPSTPTFRAASVKGATVKTQELSEVRQQLEVTEAESPQGEGSQRGSWSPPDVLSPGSA
RDEDEEDPEDSSDEGIEVVTVQDNGTTGTLFKFHSSGLPEHLQPGFLPHTNYLLPWDCAV
RLERPERGDLGVWRGRGRGKAPSQSLTVKIFIGYEYECPRGHRFMMSSPDTVVSGGSGWS
REAGEAGAGALLASSSMPVLSSCLCRAAQPAHLARLHVVTPKASIHVTLDPKVQPVPGGP
VFIPQPVGSPPIKLSSSAYWVLRFPYVYAHEHGALPRARLPPAGNVLQPMFGLQE