Genomic Position | scaffold4403:+ 489-1946 |
---|---|
See gene structure | |
CDS Length | 1176 |
Paired RNAseq reads   | 0 |
Single RNAseq reads   | 2 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011163 (1e-12) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | endonuclease-reverse transcriptase [Bombyx mori] (4e-138) |
Best NR hit (blastx)   | endonuclease-reverse transcriptase [Bombyx mori] (5e-143) |
GeneOntology terms    | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | MCL10020 |
Nucleotide sequence:
ATGGCTAAAGACCCGAGAGCCAAACTGACCCGACACTTTACCGAGGATATCCCGGACATC
AGCCTGTTTGAGATTGAGATGGCCCTAAAACAGCTAAAGAACAACAAGGCACCGGGTGAG
GACGGAATTACTTCTGTACTTCTGAAAACAGGTTTGACGACTTTCAGCCTCCCGAATAAG
CTGGGTTCCGAAAAGGATATAGTACCGTATACGCTGCGCCAGGTTATACAGAAGACCGAG
GAGTATAACTTGCCACTCTGTCTAGCGTTTGTAGACTACGAAAAAGCCTTTGATTCGGTC
GAAACATGGGTGGTACTGGAGTCTCTACAGCGATGCCACATTGACTATCGGTATATCGAA
ATCCTGAAGTATTTGTATAGAAACGCCACTATGTCGGTCCGACTTCAGAAACAGAGTTCG
AGGGCGATTCCCTTAAAAAGAGGCGTAAGACAGGGAGACGTCATATCTCCGAGACTGTTC
ACGGCTGCTTTGGAAGACACCTTCAAGCTTCTGGAATGGGAAGGACTGGGCATCAACATT
AACAGCGAATACATTACTCACCTTCGGTTTGCCGACGATATCGTTGTCATGGCAAAGTCG
ATGGAGGAACTCAGTACGATACTCGAAGGCTTCAATCGAGTCTCCCAACGGGTAGGTCTT
AAAATGAACATGGACAAGACGAAACTCATGTCTAATCTCCATGTAGTACCTACCCCTGTT
ATGGTTGAGAACCCGGTACTTGAAGTTGTTGACGCGTATGAATACCTGGGACAGACAGTC
CAGTTAGGAAGGTCCACCTTCGATAAAGAAGTCCATCGTCGAATCCAGCTCGGATGGGCA
GCGTTCGAGAAGTTCCGTAACATCTTTTCGTCCAAAATGCCTCAGTGCCTTAAGACGAAG
ACTCAAAGAGCTATGGAGAGAGCTATGCTCGGAGTTTCTCTACGGGATCGAATCGGAAAT
AATGAGATACGTAGAAGAACGAGGGTCTCCGACATAGCTAAACAGATTAGCTATTGGAAG
TGGCAGTGGGCAGATCATATAGCCCGGAGAAAAGATGGCCGTTGGGGCCGAAAAGTGCTC
GAATCGAGACCACGGATCGGAAAGCGCAGCGACGGACGTCCACCAACGAGATGGACGGAT
GACTTAGTCAAGGCCGCCGGTTCACGGTGGATGTAG
Protein sequence:
MAKDPRAKLTRHFTEDIPDISLFEIEMALKQLKNNKAPGEDGITSVLLKTGLTTFSLPNK
LGSEKDIVPYTLRQVIQKTEEYNLPLCLAFVDYEKAFDSVETWVVLESLQRCHIDYRYIE
ILKYLYRNATMSVRLQKQSSRAIPLKRGVRQGDVISPRLFTAALEDTFKLLEWEGLGINI
NSEYITHLRFADDIVVMAKSMEELSTILEGFNRVSQRVGLKMNMDKTKLMSNLHVVPTPV
MVENPVLEVVDAYEYLGQTVQLGRSTFDKEVHRRIQLGWAAFEKFRNIFSSKMPQCLKTK
TQRAMERAMLGVSLRDRIGNNEIRRRTRVSDIAKQISYWKWQWADHIARRKDGRWGRKVL
ESRPRIGKRSDGRPPTRWTDDLVKAAGSRWM